Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq50039 100 2e-16 seq35420 89.7 4e-13 seq90319 82.4 6e-11 seq27206 82.4 6e-11 >seq50039 Length=4031 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || || | || |||||||||||||| || ||| || | Sbjct 1024 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCGGCGAAG 1083 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||| ||||||||| || | | ||||||||| |||||| |||| | Sbjct 1084 ATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTGACATTG 1143 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| |||| || || ||| | || |||||||| ||||| || ||||| || Sbjct 1144 TCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTTTTTACG 1203 Query 48716 AAAATCTGCATCGTG 48730 ||||||||||||||| Sbjct 1204 AAAATCTGCATCGTG 1218 >seq35420 Length=4697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| |||||||| || ||||| || ||| | | ||||| |||||||| ||| || Sbjct 2325 CTCCTTCTGAATGTTATAGTCAGC-AAGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCGA 2267 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | | |||||||||| || | || |||||| ||| ||||||| ||| | | Sbjct 2266 AGATCAGCCTCTGCTGATCCGGTGGGATACCTTCCTTATCCTGAATTTTCGCCTTCACAT 2207 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||| ||| | |||||| || || || || | ||| || | Sbjct 2206 TGTCAATGGTGTCAGAGCTTTCCACCTCCAATGTTATCGTCTTCCCAGTCAAAGTCTTGA 2147 Query 48714 CAAAAATCTGCAT 48726 ||||||||||||| Sbjct 2146 CAAAAATCTGCAT 2134 >seq90319 Length=2932 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || || || ||||| ||||| ||| | ||||||||||| Sbjct 738 ATGAAGAGTCGACTCCTTCTGGATATTATAATCCGCCAAAGTCCGCCCATCCTCCAGCTG 797 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || ||||| || ||| || | | ||||||||| ||| || Sbjct 798 CTTTCCGGCGAAGATCAACCGCTGTTGGTCCGGTGGGATCCCCTCCTTGTCCTGAATCTT 857 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || || || | | |||| ||| | || || || || || || Sbjct 858 CGCCTTCACATTATCAATCGTGTCAGAACTCTCCACCTCCAAAGTAATCGTCTTCCCTGT 917 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| |||||||||||| Sbjct 918 CAATGTCTTCACGAAAATCTGCATC 942 >seq27206 Length=5223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||||||||| |||||||||||||| ||| | || || ||||| Sbjct 2626 ATGCAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCGCCCATCTTCAAGCTG 2685 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || | | ||| ||||| ||| | || ||||||||| ||| || Sbjct 2686 CTTACCAGCAAATATAAGCCTCTGTTGATCAGGCGGAATACCCTCCTTGTCCTGAATCTT 2745 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || ||||| | ||| ||| | || || || || || || Sbjct 2746 TGCCTTGACATTATCAATCGTATCCGAGCTCTCAACCTCTAGAGTGATCGTCTTCCCTGT 2805 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | || || ||||||||||||||| Sbjct 2806 CAATGTCTTGACAAAAATCTGCATC 2830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416753252136110