Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq219143 432 2e-116 seq211929 383 1e-101 seq342690 107 1e-18 seq227744 105 4e-18 seq408088 87.8 1e-12 >seq219143 Length=1507 Score = 432 bits (478), Expect = 2e-116 Identities = 889/1313 (68%), Gaps = 22/1313 (2%) Strand=Plus/Plus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 ||||| ||| | ||| | ||||| |||||| | ||||| | |||||| ||| || Sbjct 161 GCAGAGCAATCAGTATTAGGTGGTTTAATGTTAGATAATGAACAATGGGATACGGTTTCA 220 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAAT-TTTCAGTGAGAT 71455 || | | |||||||||||||||||| || | |||||||| ||| ||||| || || Sbjct 221 GAGCATGTAGTTGCTGATGATTTTTTTAGTAAACCTCATCGTTTAATATTTCAA-GAAAT 279 Query 71456 GGAG-AGGTTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTG 71514 | | || || | | || || | || || ||||| || || | |||| | | | Sbjct 280 GCAACAGCTTCTCGA-TCTAGGGTATCCAATCGATTTAATCACTTTGTCTGAGTCTTTAG 338 Query 71515 AACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGA 71574 |||| || || ||||||||| | | || | ||| | || | || || | ||||| | Sbjct 339 AACAAAAAGGCAAATTAGAAAGTGTAGGCAGATTTTCTTATTTGGCAGAACTATCAAAAA 398 Query 71575 ACACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTG 71634 |||| || || | ||||||||| ||| ||||| ||||| ||||| ||||| || | | Sbjct 399 ACACTCCTAGTACAGCAAATATTACTGCATATGCTGATATAGTTCGAGAACGTGCAATAG 458 Query 71635 TTCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCAGGATG 71691 | | |||||||| | || || ||| |||||||| | |||||||||| | || | | Sbjct 459 TAAGAGAAATGATATTGGTAGCTAATAAAATAGCCAATGCTGGATATGATACACAAGGTC 518 Query 71692 GCAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAA 71751 | | || | ||| | | ||| || || | || ||| |||| || |||| Sbjct 519 GAAAA---AGTGAAGAACTATTAGATTATGCAGAATCAAGTGTCTTTAAAATTGCAGAAA 575 Query 71752 AACG----ACAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCA--TTCTCGATGCAA 71805 |||| | |||||| | || || ||| |||| | |||| |||| |||| || Sbjct 576 AACGTTTTAAAAAAGA----TTCAGGACCTAAAAATATTG--AGCAAATTCTTGATGAAA 629 Query 71806 CGGTATCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATA 71865 | || || |||| ||| |||| ||| ||| |||||||| ||||| || || ||| Sbjct 630 CTGTTGCTAGCATTGAAAAGTTATTTTTATCACCTCATGATGGAGTAACAGGAATTAATA 689 Query 71866 CGGGATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTG 71925 | |||| | ||| | ||||| || ||| |||| | |||| || || || || ||| Sbjct 690 CTGGATATCAAGATTTAAATAAAAAAACGTCAGGTTTACAGCGTTCTGAACTTATTATTA 749 Query 71926 TCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCG 71985 | || || || || |||||||| || || || |||||||||||| | |||||||| | Sbjct 750 TTGCAGCACGACCTTCTATGGGAAAAACAACATTTGCGATGAATTTATGTGAAAATGCTG 809 Query 71986 CAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGA 72045 | | | ||||| || ||| | ||||||| | || ||||| | | || | | Sbjct 810 CTATGTTATATGATAAACCGGTACTCATTTTTAGTTTAGAAATGCCTGGAGAACAAATTA 869 Query 72046 TGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAAC 72105 ||||||| | ||||| | | | ||| |||| | || |||||||| || ||| Sbjct 870 TGATGCGTATGTTAGCTTCATTATCTAGAGTTAATCAAGCACGAATTCGGACTGGACAAT 929 Query 72106 TTAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGA 72165 | || || || ||||||||||| | ||||| |||| |||||| | | || ||| Sbjct 930 TAAATGATGAAGATTGGGCGCGCATGTCTGGTACAATCAATATTCTCCTCAAAAAAAAGA 989 Query 72166 ATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTC 72225 |||||| ||||||||| || || | || || | || ||||||| | || |||| Sbjct 990 ATATTTATATTGATGATTCTTCAGCATTAACTCCTAGTGAAGTACGTTCAAGAGCACGTC 1049 Query 72226 GTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGC 72285 || |||| || ||| ||| || | | |||||| |||| || || ||| | ||| Sbjct 1050 GTATTTACCGTGAGAATAATGGATTAACTTTAATTATGGTCGATTATCTTCAATTAATGA 1109 Query 72286 GCGTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGA 72345 | || || | | || ||| |||| || |||||||| || || ||| | | | | Sbjct 1110 GAGTACCTGCTTTATCTGAAAACAGAACTCTTGAAATTGCAGAAATATCTAGAACTTTAA 1169 Query 72346 AGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGC 72405 | || || || || ||| | ||||| || ||| | ||||| |||||||||||||| || Sbjct 1170 AAGCATTAGCAAAAGAACTTCAAGTTCCAGTGATAGCATTATCACAACTTAATCGTTCTT 1229 Query 72406 TTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTG 72465 | ||||| | | || || |||| |||||||||||||||||||||||||| | | | Sbjct 1230 TAGAACAAAGATCTGATAAGAGACCAGTAAATTCAGATTTACGTGAATCAGGTTCTTTAG 1289 Query 72466 AGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCG 72525 | || || || || | || |||||| | || || || ||| ||||||| |||| | Sbjct 1290 AACAAGATGCTGATTTAATAATGTTTATATACCGAGATGAAATTTATCATGAAAATAGTG 1349 Query 72526 AAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGG 72585 | | || || ||||| || |||| || ||||| ||| ||||||| |||||||| || | Sbjct 1350 ATTTTAAAGGAATTGCAGAAATAATAATAGGAAAACAAAGAAATGGTCCAATTGGAACAG 1409 Query 72586 TGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTATGCCGGTGCT 72638 | | | ||||||| || || | || | ||||| |||||||| ||| || Sbjct 1410 TATGTCTAACTTTTAATGGACACTGGTCTAGATTTGACAACTATGCAGGTCCT 1462 >seq211929 Length=1554 Score = 383 bits (424), Expect = 1e-101 Identities = 869/1302 (67%), Gaps = 6/1302 (0%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 |||||||| | ||| | ||||| |||||| | ||||| | |||||| ||| || Sbjct 1349 GCAGAACAGTCAGTATTAGGTGGATTAATGTTAGATAATGAACAGTGGGATAGTGTTTCA 1290 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456 || | | |||||||||||||||||| || || ||||||| ||| || || ||| Sbjct 1289 GAACATGTAGTTGCTGATGATTTTTTTAGCAAACCTCATCGCTTAATATTTGAAGAAATG 1230 Query 71457 GAGAGG-TTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515 | | || || | || || | || || ||| |||| || || | || | | || Sbjct 1229 CAAAAACTTCTTGA-TCTAGGATATCCAATAGATCTGATTACTCTATCCGAGTCTTTAGA 1171 Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575 ||| || || ||||||||| | | |||| | ||| | ||| | || || | ||||| || Sbjct 1170 ACAAAAAGGAAAATTAGAAAGTGTCGGTAGATTTTCTTACTTAGCTGAATTATCAAAAAA 1111 Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635 || || ||| | |||||||| ||| ||||| ||||| || || ||||| || | || Sbjct 1110 TACCCCTAGCACCGCAAATATCACTGCATATGCTGATATAGTACGAGAACGTGCAATAGT 1051 Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATGCGCAGGATGGCAG 71695 | || ||||| | || || || ||||||| | || ||||||| | ||||| Sbjct 1050 AAGAGAGATGATATTAGTAGCTAACAAAATAGCTAATGCCGGATATGATACACAAGGCAG 991 Query 71696 GGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAAACG 71755 ||| | ||||| | ||| || || | || ||| |||| || |||||||| Sbjct 990 AAAGAGCGAAGAATTATTAGATTATGCAGAATCAAGTGTATTTAAAATTGCAGAAAAACG 931 Query 71756 AC--AAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATCT 71813 |||| || || | |||||| || | | ||||| |||| ||| || | Sbjct 930 GTTTAAAAAAGACTCAG--GACCAAAAAATGTTGAACAAATTCTTGATGAAACTGTTGCG 873 Query 71814 CGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGGGATTT 71873 | || ||| | |||||| || || ||||||||||| || || | || |||| | Sbjct 872 AGTATTGAAAAATTGTTTTTATCTCCTCACGATGGTGTAACAGGAATTAACACAGGATAT 813 Query 71874 ACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCC 71933 || | ||||| ||||| |||| | |||| || || || || ||| | || || Sbjct 812 CAAGACTTAAATAAAAAGACATCAGGATTACAGCGCTCTGAACTGATTATTATTGCAGCA 753 Query 71934 CGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGT 71993 | || || ||||| || || || ||||| |||||| | |||||||| || | | | Sbjct 752 AGACCTTCAATGGGAAAAACGACATTTGCAATGAATTTGTGTGAAAATGCTGCTATGCTT 693 Query 71994 AACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGC 72053 | || || || ||||| | ||||| | || ||||| | | || | ||||||||| Sbjct 692 TATGAAAAACCTGTATTAATATTTAGTTTAGAAATGCCTGGAGAACAAATTATGATGCGC 633 Query 72054 TCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGAC 72113 |||| ||| | | | ||| |||| | || ||||| || || ||| | || || Sbjct 632 ATGTTGGCATCTTTGTCTAGAGTTAATCAAGCACGAATTCGAACTGGACAATTAAATGAT 573 Query 72114 GAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTT 72173 || |||||||| || | |||||| | || || || | | || ||||||| | Sbjct 572 GAAGATTGGGCACGTATATCTGGCACTATTAACATCCTTCTTAAAAAAAAGAATATCTAC 513 Query 72174 ATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTAT 72233 || ||||| ||| || | || || | || | ||||| | || |||||| ||||| Sbjct 512 ATCGATGATTCATCAGCATTAACCCCTAGTGAAGTCCGTTCAAGAGCGCGTCGTATTTAT 453 Query 72234 AAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCC 72293 |||||| ||| || | | |||||| | || || ||||||| ||| | || || Sbjct 452 CGTGAAAATAATGGATTAACTTTAATTATGGTTGATTATTTGCAACTAATGAGAGTGCCT 393 Query 72294 GAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTG 72353 || || || || || || |||||||| || || ||| | | | || || || Sbjct 392 TCTCTATCTGAAAATCGTACTCTTGAAATTGCAGAAATATCTAGAACGTTAAAAGCATTA 333 Query 72354 GCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAG 72413 || || ||||||||||| || || | ||| | ||||||||||||||||| | || || Sbjct 332 GCAAAAGAATTACAAGTTCCAGTAATAGCACTATCACAACTTAATCGATCTTTAGAGCAA 273 Query 72414 CGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGAC 72473 | | || ||| |||| ||||||||||||||||||||||||||| | | || || || Sbjct 272 AGATCTGATAAAAGACCAGTAAATTCAGATTTACGTGAATCAGGATCTTTAGAACAAGAT 213 Query 72474 GCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAG 72533 || || | || |||||| | || || || ||| ||||| | |||| || | ||| Sbjct 212 GCTGATTTAATAATGTTTATATACCGTGATGAAATTTATAATGAAAATAGTGATCTTAAG 153 Query 72534 GGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTG 72593 || || || || | || || ||||||||| ||||||| |||||||| || || | || Sbjct 152 GGAATAGCAGAAATTATAATAGGAAAGCAAAGAAATGGACCAATTGGAACAGTCTGTTTA 93 Query 72594 GCTTTTAACGGCCAATACTCACGGTTTGATAACTATGCCGGT 72635 ||||||| || || | || | |||||||||||| | ||| Sbjct 92 ACTTTTAATGGACATTGGTCTAGATTTGATAACTATTCTGGT 51 >seq342690 Length=956 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 21198 AAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTTGCTGAAATTGCGAGT 21257 ||||| ||||||||||||||| | | || || || |||||| | || |||||||| || Sbjct 779 AAAGAAAAAACAGAATGGCATAGAATAGTATTATTTGGAAAATTAGCAGAAATTGCCGGT 720 Query 21258 GAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTTAAAACCCGTAAGTGG 21317 || ||| | |||||||||||||| || || || ||||| ||| |||| | || ||| Sbjct 719 GAATATCTTCGAAAAGGTTCTCAAGTATATATTGAAGGATCACTACAAACTAGAAAATGG 660 Query 21318 ACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTCAGCCAGGGCGGCACC 21377 ||| | ||| |||||||||| || || |||||| | || | || || || Sbjct 659 CAAGACCAAAATGGTTTAGAACGTTATACTACAGAAATTGTTGTAAATATTGGTGGGACT 600 Query 21378 ATGCAAATG 21386 ||||||||| Sbjct 599 ATGCAAATG 591 >seq227744 Length=1455 Score = 105 bits (116), Expect = 4e-18 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 |||||||| ||||| || || ||||| | |||||||| || || | | ||||| Sbjct 120 GGTGTAAATAAAGTTATTCTTATTGGGCATTTAGGGCAAGATCCTGAAGTTCGTTATATG 179 Query 21123 CCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAAG 21182 |||||||| || || | || | | | || || ||| ||| || || Sbjct 180 CCAAATGGTAATGCAGTAGTAAATATGACATTAGCTACTTCAGAAAATTGGAAAGATAAA 239 Query 21183 CAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTT 21242 | || || || | ||||| |||||||||||||| | | ||||| || |||||| | Sbjct 240 AACACTGGGGAAAATAAAGAAAAAACAGAATGGCATCGAATAGTTTTATTTGGAAAATTA 299 Query 21243 GCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTT 21302 || |||||||| | || ||| | |||||||||||||| || || || ||| ||| || Sbjct 300 GCAGAAATTGCTGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATTGAA-GGATCGTT 358 Query 21303 A-AAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGT 21361 | |||| | || ||| |||| | || | ||||||||||| || |||||||| || Sbjct 359 ACAAACTAGAAAATGGCAAGATCAAAATGGACTTGAACGTTACACTACAGAAATTATTGT 418 Query 21362 CAGCCAGGGCGGCACCATGCAAATG 21386 | || || || ||||||||| Sbjct 419 AAATATTGGTGGTACAATGCAAATG 443 >seq408088 Length=780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||||||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 621 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 680 Query 70993 CCGGTAGGGGCCACCA 71008 || | | |||||| || Sbjct 681 CCAGCAAGGGCCATCA 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299997378671310