Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq343791 113 2e-20 seq6966 113 2e-20 seq760777 111 8e-20 seq163008 111 8e-20 seq58032 111 8e-20 seq49482 111 8e-20 seq927 111 8e-20 seq329833 109 3e-19 seq142688 109 3e-19 seq51830 109 3e-19 seq18170 107 1e-18 seq287 107 1e-18 seq194742 105 3e-18 seq293213 104 1e-17 seq51659 102 4e-17 seq252374 100 1e-16 seq58760 100 1e-16 seq46252 100 1e-16 seq2067 100 1e-16 seq188765 96.9 2e-15 seq13412 95.1 6e-15 >seq343791 Length=952 Score = 113 bits (124), Expect = 2e-20 Identities = 90/106 (85%), Gaps = 6/106 (6%) Strand=Plus/Minus Query 11430 AATATAGAATTA---ATAAAAAATC--AAAT-TGGCCCATGAAAGGATCGAACCTTCGAC 11483 || ||||||||| ||||||| | | || ||||||||| | | |||||||| |||| Sbjct 658 AAAATAGAATTATGAATAAAAAGTGTTACATATGGCCCATGCAGGTCTCGAACCTGCGAC 599 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 598 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 553 >seq6966 Length=7997 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1371 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1430 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 1431 CAACTGAGCTAATAGGCCG 1449 >seq760777 Length=355 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 295 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 236 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 235 TGAGCTAATGGGCCG 221 >seq163008 Length=1944 Score = 111 bits (122), Expect = 8e-20 Identities = 81/94 (86%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11440 TAATAAAAA---ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||| || || ||||||||| | | |||||||| ||||||||||||||||| Sbjct 1691 TAATCAAAATAGATTAATGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 1750 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 1751 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1784 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1229 TGGCCCATGCAGATCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1288 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 1289 TGAGCTAATAGGCCG 1303 >seq58032 Length=3748 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1033 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 974 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 973 CAACTGAGCTAATGGGCC 956 >seq49482 Length=4052 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3422 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3481 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 3482 CTGAGCTAATGGGCC 3496 >seq927 Length=12290 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4139 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4080 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 4079 TGAGCTAATGGGCCG 4065 >seq329833 Length=996 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| |||||||||| | | | |||||| ||||||||||||||||||||||| Sbjct 657 TAAAAAAT----TTGGCCCATGCAGGTTTTGAACCTGCGACCTTCGCGTTATTAGCACGA 712 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 713 CGCTCTAACCAACTGAGCTAATGGGCC 739 >seq142688 Length=2151 Score = 109 bits (120), Expect = 3e-19 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| | || || ||| || | | |||| ||||||||| | | |||||||| |||||||| Sbjct 1770 GAAGTTTAAAAATAAAAAGATAACAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 1711 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| |||||||||| |||| Sbjct 1710 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 1669 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||||||||||||||||||| || ||||| Sbjct 1928 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCACTAACCAA 1869 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 1868 CTGAGCTAATGGGCC 1854 >seq51830 Length=3962 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 428 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 487 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 488 TGAGCTAATGGGCC 501 >seq18170 Length=6010 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 2145 AAAAACCAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 2087 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 2086 CTCTAACCAGCTGAGCTAATAGGCC 2062 >seq287 Length=14941 Score = 107 bits (118), Expect = 1e-18 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| | ||||| ||||| ||||||||| | | |||||||| ||||||||| Sbjct 2405 AAATATAAATTTAATCAAAAAA-----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 2459 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 2460 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 2500 >seq194742 Length=1677 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| |||| || |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 1506 AAAAATTCAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 1447 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 1446 CGCTCTAACCAGCTGAGCTAATAGGCC 1420 >seq293213 Length=1129 Score = 104 bits (114), Expect = 1e-17 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 780 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 839 Query 11515 CTGAGCTAATGGGCCGTCGAC 11535 |||||||||| |||| ||||| Sbjct 840 CTGAGCTAATAGGCC-TCGAC 859 >seq51659 Length=3967 Score = 102 bits (112), Expect = 4e-17 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2985 AAAAA--AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2928 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 2927 GCTCTAACCAGCTGAGCTAATAGGCC 2902 >seq252374 Length=1318 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 814 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 755 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 754 TGAGCTAATAGGCC 741 >seq58760 Length=3724 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2943 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2884 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 2883 TGAGCTAATAGGCCATC 2867 >seq46252 Length=4179 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 802 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 743 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 742 TGAGCTAATAGGCC 729 >seq2067 Length=10613 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3655 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3714 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3715 TGAGCTAATAGGCC 3728 >seq188765 Length=1722 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| |||||||| |||||||||||||||||||| | Sbjct 23 AAATCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAA 82 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 83 CCAGCTGAGCTAATAGGCC 101 >seq13412 Length=6626 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 1501 AACTTGGCCTATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1560 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 1561 CAACTGAGCTAATAGGCCG 1579 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258699104014360