Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq64520 453 3e-123 seq836247 179 1e-40 seq533404 168 2e-37 seq147675 127 6e-25 seq81374 114 4e-21 seq10361 87.8 5e-13 >seq64520 Length=3547 Score = 453 bits (502), Expect = 3e-123 Identities = 585/805 (73%), Gaps = 2/805 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 806 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 747 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| ||||||| || || || || Sbjct 746 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 687 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || ||||| ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 686 CCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 627 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| |||| ||||| || || Sbjct 626 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATA 567 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||||||||||| || ||||| ||| |||| |||| Sbjct 566 TGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTT 507 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | ||||||| || || | | Sbjct 506 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGT 447 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| |||| ||||| || |||||| |||| || | |||| || |||| Sbjct 446 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 387 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| |||| ||||| || ||| ||||||||||||||| || || Sbjct 386 GT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 328 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || Sbjct 327 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 268 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||||| || || ||||| |||||||| || || || || ||||||||| || Sbjct 267 ATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 208 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 |||||| || || | |||| |||||| || || ||| ||| || | || Sbjct 207 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 148 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || |||||||| || || || || || || ||||| Sbjct 147 TTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 88 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| || |||||||||||||||||||| || || Sbjct 87 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 28 Query 20069 TACTTTCCCCGTGGTTGGCATATGG 20093 | ||| || || || || || ||| Sbjct 27 TGCTTGGCCTGTAGTAGGTATCTGG 3 >seq836247 Length=317 Score = 179 bits (198), Expect = 1e-40 Identities = 227/312 (73%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||||| | || | ||||||||| ||||| ||| | |||||||| || || Sbjct 5 TGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGA 64 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 ||||| ||||||||||| || || |||||||| | || || ||||| | || || Sbjct 65 GCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGCTC 124 Query 19868 TCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGA 19927 || || ||||||||| || |||||| || || | |||| |||||| || || Sbjct 125 CCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGA 184 Query 19928 GGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGT 19987 || ||| || | || || | ||| | ||||| ||||| || |||||||| || Sbjct 185 AAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATCGT 244 Query 19988 CGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCG 20047 || || || || || ||||| ||||||| || ||||||||| |||||| | |||| Sbjct 245 AGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTCTCA 304 Query 20048 TTCTTTACATTT 20059 |||||||||||| Sbjct 305 TTCTTTACATTT 316 >seq533404 Length=557 Score = 168 bits (186), Expect = 2e-37 Identities = 184/242 (76%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 20033 TTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATG 20092 |||||| || |||||||||||| ||||||| || ||| ||| || || || || || || Sbjct 555 TTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 496 Query 20093 GCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 | | || | | || ||| ||||||||||||||||||| |||||||| || || ||||| Sbjct 495 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 436 Query 20153 GTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAG 20211 || ||||||||| ||||| || |||| || ||||||||| | | || | | Sbjct 435 ATCGGTAGTTGATAGTCAA-GGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTG 377 Query 20212 CTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAG 20271 ||||||| || | ||||||||||| || || ||||||||||| ||||| || || |||| Sbjct 376 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAG 317 Query 20272 CT 20273 || Sbjct 316 CT 315 >seq147675 Length=2096 Score = 127 bits (140), Expect = 6e-25 Identities = 139/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 19651 TAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTG 19710 |||| ||| |||| |||| | || |||||| |||| || | |||| || |||| Sbjct 1473 TAGGTATGCGACCTTGGACTGTTGTTGCATATTCAGCTCCTGTTACAGCTGCGACTGCTA 1414 Query 19711 TGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 | ||||| | | |||| | |||| ||||| || ||| ||||||||||||||| || || Sbjct 1413 T-TTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 1355 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 ||||||||||| ||||| ||| | |||||||| || || ||||| ||||||||||| || Sbjct 1354 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 1295 Query 19830 TT 19831 || Sbjct 1294 TT 1293 >seq81374 Length=3119 Score = 114 bits (126), Expect = 4e-21 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 19722 TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTT 19781 |||||| |||| ||||| || ||| | ||||||||||||| | || | ||||||||| Sbjct 620 TACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTC 561 Query 19782 AACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCA 19834 ||||| ||| | ||||||||||| |||||||| |||||||||||||| || || Sbjct 560 AACTTCATGATTGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 >seq10361 Length=7172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 20130 CTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAAC 20188 || |||||||| || || ||||| || ||||||||| ||||| | | | |||| || Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATG-TAATTAGTAC 313 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 ||||||| | | ||| |||||||| || | ||||||||||| || || ||||| Sbjct 312 TTGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGC 253 Query 20249 TCATAACTTCCCACTTGATTTAGCT 20273 |||||| ||||| || || |||||| Sbjct 252 TCATAATTTCCCTCTAGACTTAGCT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142938857579160