Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq64520 379 3e-100 seq533404 168 1e-36 seq147675 143 4e-29 seq836247 136 6e-27 seq10361 102 1e-16 seq81374 95.1 2e-14 >seq64520 Length=3547 Score = 379 bits (420), Expect = 3e-100 Identities = 563/793 (71%), Gaps = 4/793 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| | Sbjct 806 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 748 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| || || | Sbjct 747 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTC 689 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | ||||| |||| Sbjct 688 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 629 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || || || ||||| || |||| |||| || || ||||| || || || || | Sbjct 628 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAA 569 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||||||| | ||||||| ||| | ||||||||||||||||| | | | Sbjct 568 TATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 509 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | |||||||| | ||||||| ||| | || Sbjct 508 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCC 449 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| |||||| |||||||| ||||| |||| || | Sbjct 448 GTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 389 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | | |||||| | ||||| || || || || ||||||||| |||| | Sbjct 388 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 329 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || || || |||||||||||| | |||||||| || || || |||||||||||||||| Sbjct 328 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 269 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| ||| || || ||| | ||||| || | |||| ||||||||| | Sbjct 268 CATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 209 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 ||||| | || || ||| | ||| | |||||||| | || || || | | Sbjct 208 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 149 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| ||||| ||||||||||| || ||||| ||||| || || ||||| || || | Sbjct 148 GTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 89 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| ||||||||| | |||||| |||||||| | Sbjct 88 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 29 Query 212348 CATCATGGCCTGT 212360 | | |||||||| Sbjct 28 CTGCTTGGCCTGT 16 >seq533404 Length=557 Score = 168 bits (186), Expect = 1e-36 Identities = 178/234 (76%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||| | |||||||| || | |||||||| | || | ||||| || || | ||||| Sbjct 537 TTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 478 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 477 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCA 418 Query 212451 AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 ||| || || |||||||| |||| | ||||| | || ||||||||||||||||| Sbjct 417 AGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGT 358 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 |||||| ||| | ||||| || || ||||| || ||||||| |||||| ||| Sbjct 357 TATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAG---CTGCTATCGA 307 >seq147675 Length=2096 Score = 143 bits (158), Expect = 4e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGT-GT 211955 || ||||| | ||||||| ||| | || | |||||||||| ||||||| |||| || Sbjct 1507 TATATGGGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGA-CTGTTGT 1449 Query 211956 TGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCA 212015 ||| |||||||| ||||| |||| || ||| | ||| | | |||| | | ||||| Sbjct 1448 TGCATATTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCA 1389 Query 212016 GGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGT 212075 || || || || ||||||||| |||| || || || || |||||||||||| | || Sbjct 1388 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 1329 Query 212076 ATTCCAAGCAGAACATAACATCCTTATGCACCCATT 212111 |||||| || || || |||||||||||||||||||| Sbjct 1328 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq836247 Length=317 Score = 136 bits (150), Expect = 6e-27 Identities = 207/295 (70%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085 || || ||||||||| || | || | || || |||||||||||| | |||||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145 || || |||||||||||||||||||| || ||| | | || | | | || | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACT 212205 | |||| ||||||||| |||||| | || || ||| | ||| | |||||||| Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 212206 GGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATC 212265 | | || || | ||||||| ||| | ||||||||||| || ||||| ||| Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 212266 GTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACA 212320 || || || ||||| || || || || | |||||||| ||||| ||||||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA 297 >seq10361 Length=7172 Score = 102 bits (112), Expect = 1e-16 Identities = 116/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 212410 CTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACT 212469 |||||||| ||||| ||||||||||| || |||||| |||| | || || |||| Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACT 312 Query 212470 TGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCA 212529 |||| || | |||| || ||||||||||| ||||||||||| ||| | ||||| Sbjct 311 TGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCT 252 Query 212530 CACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 || || ||||| || ||||||| |||||| ||| Sbjct 251 CATAATTTCCCTCTAGACTTAG---CTGCTATCGA 220 >seq81374 Length=3119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 211953 TGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGG 212012 |||||| |||||| | ||| | ||| || ||| ||| | | |||||| | || Sbjct 669 TGTTGCATATTCAACTCCTATTGCAGTTGCGACTATTGTTTTCTTAATCTACCCAATTGG 610 Query 212013 TCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTT 212072 ||| || || || | ||||||||| || | || | || || |||||||||||| | Sbjct 609 TCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTCAACTTCATGAT 550 Query 212073 CGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCA 212114 ||||||||||| ||||| |||||||||||||| ||||| || Sbjct 549 TGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 798711360171600