Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq227744 140 1e-28 seq342690 123 7e-24 >seq227744 Length=1455 Score = 140 bits (154), Expect = 1e-28 Identities = 236/342 (69%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 32902 ACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTCTG 32961 ||| | ||||||||| || |||| || || || | ||| |||||| | || | | Sbjct 449 ACCTAACATTTGCATTGTACCACCAATATTTACAATAATTTCTGTAGTGTAACGTTCAAG 390 Query 32962 TCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCC 33021 |||| |||| || ||||||||||| || | || ||||||| ||| || | ||| || Sbjct 389 TCCATTTTGATCTTGCCATTTTCTAGTTTGTAACGATCCTTCAATATATACTTGAGAACC 330 Query 33022 TTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCA 33081 |||||| ||||| |||| ||||||||||| | ||| || | || | || ||||| Sbjct 329 TTTTCGAAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCGATGCCA 270 Query 33082 CTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCTAT 33141 || || | || || | || ||||| ||||||||| ||| | |||||| ||||||| Sbjct 269 TTCTGTTTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGTAGCTAA 210 Query 33142 TGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCCAAC 33201 ||||| || | | || | || ||| || | |||||| || ||||| || | Sbjct 209 TGTCATATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGCCCTAA 150 Query 33202 CCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 | | || | ||| || |||||||| ||||| || ||||| Sbjct 149 ATGCCCAATAAGAATAACTTTATTTACACCTCTACTGGCCAT 108 >seq342690 Length=956 Score = 123 bits (136), Expect = 7e-24 Identities = 237/345 (69%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 32902 ACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTCTG 32961 ||| | ||||||||| || |||| || || | | ||| ||||| | || |||| Sbjct 585 ACCTAACATTTGCATAGTCCCACCAATATTTACAACAATTTCTGTAGTATAACG-TTCTA 643 Query 32962 T-CCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGC 33020 ||| ||||||| ||||||||||| || | | | ||||||| ||| || | ||| | Sbjct 644 AACCATTTTGGTCTTGCCATTTTCTAGTTTGTAGTGATCCTTCAATATATACTTGAGAAC 703 Query 33021 CTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCC 33080 ||||||| ||||| || | |||||||||||| | ||| || | || | | |||| Sbjct 704 CTTTTCGAAGATATTCACCGGCAATTTCTGCTAATTTTCCAAATAATACTATTCTATGCC 763 Query 33081 ACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGCTA 33140 | || || | || || | || ||||||||||||||| ||| | |||||| || |||| Sbjct 764 ATTCTGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTA 823 Query 33141 TTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTAT--CTAACTTCCGGGTCTTGTCC 33198 |||| || | | || | || || | | ||| | ||||| || |||||||| Sbjct 824 AAGTCATATTTACTACTGCATTACC--ATTGGGCATATAACGTACTTCTGGATCTTGTCC 881 Query 33199 AACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 | | | || | ||| || ||||| |||||||| |||||||| Sbjct 882 TAAATGTCCAATAAGAATAACTTTATTAACGCCTCTACTTGCCAT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148398261860840