Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq48246 93.3 4e-14 seq119719 89.7 5e-13 >seq48246 Length=4099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| ||||||||||| || || || ||||| | |||||||| || || || || Sbjct 1573 CAAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGT 1632 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 ||| || ||||| || || | || || |||||||| || | |||| | || ||| |||| Sbjct 1633 TAATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAA 1691 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGC 21618 ||||||| || |||||| ||| || || Sbjct 1692 AGAAAATCCCTTCAACGCAAGCGAAAGC 1719 >seq119719 Length=2442 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| ||||| |||||||| | ||| || || ||| ||| | || ||| || || || || Sbjct 195 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTCAA 136 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGA 21573 || ||||||||||| ||||| ||||||||||||||||| Sbjct 135 CCCTGGCATTAATCCCCTCTTCTTTAACCAAAATATTGA 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526075754876400