Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq48246 170 2e-37 seq107321 163 4e-35 seq6274 131 2e-25 seq23164 122 1e-22 >seq48246 Length=4099 Score = 170 bits (188), Expect = 2e-37 Identities = 584/903 (65%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || ||||| || | ||| ||||| ||||| || || || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||| |||||||||| || |||| || | ||| | |||||||| || | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || ||||| || |||||||| || ||| |||||| || | ||||| |||| ||| Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 33192 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 | || | || ||||| | || ||| |||||| |||||||| | | Sbjct 1465 AGCACAAGGTAAGGCATCGCAG--ACGAACTCTCTTTCAATCTCCACCGCATCGGAGACG 1522 Query 33250 ATAGATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACAT 33306 || | || ||| |||||| | | | || ||| | || || |||| Sbjct 1523 ATTCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACAC 1579 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || ||||| ||||| | ||||| |||| |||| |||||| || || || | ||| Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| | ||||| || || | |||||| || | ||| ||| |||||||| || Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGTATCC 33484 ||||| || ||| || || |||| | |||| || | || | | | ||| |||| Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAA--CGTCTCCGAGCCATCGATCC 1757 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | || ||||||||| || ||||| | ||||| || || || || || || |||| Sbjct 1758 ATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGA 1817 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | | |||| |||||| || || | || | || | | | ||| ||||| || | Sbjct 1818 GTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCGG 1877 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 | || || || || ||||| ||||| ||||||||||| | ||||| | || || | Sbjct 1878 AGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGAA 1937 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 | ||| | |||||| | || | ||||| || || || || ||| || || | Sbjct 1938 CCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAGA 1997 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT--CATT 33782 | || | || || | ||||| | | ||| | ||| | | ||| | | || Sbjct 1998 AGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGTT 2057 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | ||||| ||| | ||| || ||||| |||||||||| || || || || || || || Sbjct 2058 G--ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTA 2115 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 33902 ||| | ||| || | | || || |||||||| ||| || | || ||| ||||| || Sbjct 2116 CATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAGC 2175 Query 33903 AAG 33905 ||| Sbjct 2176 AAG 2178 >seq107321 Length=2628 Score = 163 bits (180), Expect = 4e-35 Identities = 574/894 (64%), Gaps = 2/894 (0%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || |||||||| || || | || ||||| ||||| || || || | |||||| || | Sbjct 1585 TTCTGGTATTCGCCGACCCTCTTCTCGAAGAAATTGGTCTTACCCTGCAATGAAATCAGT 1526 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| || || |||||| || || || ||||||| || |||| Sbjct 1525 TCCATCCAATCAAATGGGTTCTGAACATTGTACATCTTCCCGTATCCCAAAGCACCAATC 1466 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||| ||| || || || || |||||||| |||| | || ||||| || | | Sbjct 1465 AATCGATCTGCTACAAACTCGATATATGTGCTCATAAGATCGGCGTTCATCCCCACCAAC 1406 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || | || || | ||||| ||||| ||| ||||| | | || Sbjct 1405 CCACACGGCAATGCTTCACAGACGAATTCCCTCTCAATCTCTACAGCATCAGCCACGATT 1346 Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | || ||||||||| | | || | | | | || | ||| || ||||| Sbjct 1345 GCCTTCACTCGCTCTTCACTCAGCTTCATCTTCAACAGGCTGTAA-AGCAAGCACGCGAA 1287 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 || ||||||| ||||||||||| || | |||||| || || || || || ||||| Sbjct 1286 GTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCAT 1227 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || || || ||||| ||||| ||||||| ||| || || |||||||| ||||| Sbjct 1226 AAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTC 1167 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTG 33491 || ||| || || || | | ||| | | | ||| ||||| | | Sbjct 1166 GACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGATCCATCGATCCATCTGAG 1107 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 ||||| | || ||||| | | ||||| || || || || || ||| || | Sbjct 1106 GGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAGCCTACT 1047 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 || || || ||||| | || | |||| | ||||| ||||| || || || || Sbjct 1046 CTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACATCTCGGAGTGGAT 987 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 ||| || || || ||||| ||||||||||| | ||||| | || || || ||| | Sbjct 986 GTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGGACCTCTTT 927 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 || ||| | || | ||||| || ||||| || ||| || || || || | Sbjct 926 CATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGGCGAAGAATGCGAG 867 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 || || | || || || | ||| | |||| || | ||| | | || | Sbjct 866 GACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCACTGACGCTGGTCCTG 807 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || | ||| || || ||| | ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 806 TGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTTTGTACATTTCCCA 747 Query 33852 GATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 33905 ||| | | |||||||||||||| ||| ||||||| ||| ||||| ||||| Sbjct 746 GATCTGAGGGTATTGGATTGGGAACATACAGAATCTATCTGGGTTTGGAGCAAG 693 >seq6274 Length=8207 Score = 131 bits (144), Expect = 2e-25 Identities = 208/297 (70%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 ||| || ||| | | ||||||| |||||| |||||||| || | || || | || Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGC---AAATGCA-- 4879 Query 63362 CCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63416 || ||| ||| ||||| || || | |||| ||| |||| |||| | || | |||| Sbjct 4880 CCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAAC 4939 Query 63417 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGA 63476 |||||||||||||| || ||| | ||||| || || || || |||||| | || | Sbjct 4940 ATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTG 4999 Query 63477 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63536 |||||| | || | ||| || |||||||| ||| ||| | || ||| |||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTT 5059 Query 63537 AACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || |||||||| || || ||||||||||| ||||| | || ||||||||| Sbjct 5060 AAAGTATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| ||||| || || || |||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||| ||| | || || ||||| | ||||||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || || |||||||||||||| | | | | || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 ||||| || || | || | || || | |||| | || | ||||||||||| |||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 |||||| | ||||| || || || ||||||||| | |||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTGTCATAGAT 63550 | || ||||| |||| | | || | | |||| || ||| ||||| |||||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 | | || ||||| ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616125071607600