Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq50039 116 4e-21 seq27206 109 5e-19 seq90319 104 2e-17 seq48514 102 8e-17 seq40887 102 8e-17 seq102355 95.1 1e-14 seq75854 91.5 1e-13 seq78250 89.7 5e-13 seq149253 87.8 2e-12 seq86036 86.0 6e-12 >seq50039 Length=4031 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| |||| || ||| | |||||| | || ||||||| | Sbjct 1214 ATGCAGATTTTCGTAAAAACCCTAACCGGGAAAACCATCACCCTAGAGGTAGAATCCTCC 1155 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| || || ||||| ||||| || || || ||||| Sbjct 1154 GACACCATCGACAATGTCAAAGCGAAAATCCAAGACAAGGAAGGCATCCCACCGGATCAG 1095 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | ||| | || ||| ||||| || || || || |||| | | |||||| ||| Sbjct 1094 CAACGTCACATCTTCGCCGGAAAACAGCTGGAGGACGACAGAACCCTAGCCGACTACAAC 1035 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| ||| |||| || ||||| Sbjct 1034 ATCCAGAAGGAATCCACTCTCCACCTTGTCCT 1003 >seq27206 Length=5223 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || ||||| || ||| | ||||| | || | ||| Sbjct 3058 AATGCAGATCTTCGTCAAGACGTTAACCGGGAAAACAATCACTCTAGAGGTTGAAAGTTC 2999 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | ||||| |||||| |||||||||||||| || || ||||| Sbjct 2998 TGATACGATCGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGGATTCCACCGGATCA 2939 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| | || || | | ||| || || | ||||||| ||||| | | ||| || |||| Sbjct 2938 ACAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAAGATGGTAGAA-CTTTAGCTGATTATA 2880 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||| ||||| ||| | ||||| || |||||| | || ||||| Sbjct 2879 ACATTCAAAAGGAATCGACTTTGCATCTTGTTCTGAGATTGAGGGGAGG 2831 >seq90319 Length=2932 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || |||||| | |||||| | || | || | Sbjct 1397 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCC 1338 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 1337 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAA 1278 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| ||||| || ||||| | |||| | || |||||| ||| Sbjct 1277 CAGAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAAC 1218 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||| ||||||| Sbjct 1217 ATCCAGAAGGAATCAACCCTCCATTTGGTCCT 1186 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| | ||||| |||| | ||| | Sbjct 1625 ATGCAAATATTCGTCAAAACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAAAGCTCC 1566 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| ||||| ||||| || || || ||||| Sbjct 1565 GACACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGATCAG 1506 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| ||||| || ||||| | | | | || |||||| ||| Sbjct 1505 CAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCCGTACCCTCGCCGACTACAAC 1446 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || ||||| ||||||| Sbjct 1445 ATCCAAAAGGAGTCAACCCTCCATTTGGTCCT 1414 >seq48514 Length=4088 Score = 102 bits (112), Expect = 8e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TC 26824 |||||| | || || || || |||||||||||| | |||| | || | ||| || Sbjct 3169 AATGCAGATCTTCGTCAAGACGTTAACTGGAAAAACAGTCACACTGGAGGTTGAAAGCTC 3110 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || ||||| | || || ||||| |||||||||||||| || || || Sbjct 3109 TAAT---ACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGA 3053 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACT 26943 ||||||| | || || | || || || || | ||||||| ||| ||| | ||| || | Sbjct 3052 TCAACAACGTCTGATCTTCGTTGGTAAGCAGTTGGAAGATGGTAG-AACTTTAGCTGATT 2994 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| ||||| ||||| ||| | |||||||| ||||| | || ||||| Sbjct 2993 ATAACATCCAAAAGGAATCCACTTTGCATCTGGTTCTGAGGTTGAGGGGAGG 2942 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| || || || ||| ||| | || |||| Sbjct 2940 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACGACCACTTTAGAGGTAGAGAGCTCG 2881 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || ||||||| || || || ||||| || || |||||| Sbjct 2880 GACACCATTGATAATGTGAAGGCAAAGATTCAGGATAAGGAGGGGATTCCGCCTGATCAA 2821 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | | || || || || |||||||| |||| | | || || || || Sbjct 2820 CAGAGGCTTATATTTGCTGGGAAGCAGCTTGAAGATGAGAGAA-CTTTGGCTGATTACAA 2762 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| ||||| ||| | || || ||||| | |||||||| || Sbjct 2761 CATTCAAAAGGAATCAACTTTGCACCTTGTCCTTCGTCTTAGAGGTGG 2714 >seq40887 Length=4418 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || |||||| | |||||| | ||| | ||| | Sbjct 2529 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACAATCACCTTGGAAGTGGAAAGCTCC 2588 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| || ||| ||||| ||||| || || || || || Sbjct 2589 GACACCATTGACAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2648 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATAA 26947 ||| | ||||| | || ||| ||||| ||||| || | | | | | ||| ||||||| Sbjct 2649 CAACGTCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGA-CATTGGCGGACTATAA 2707 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || ||||| ||||||| ||||| Sbjct 2708 CATCCAGAAGGAGTCTACCCTCCATCTTGTCCT 2740 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || |||||| | |||||| | ||| | ||| Sbjct 2073 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCTTGGAAGTCGAAAGCTCT 2132 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| || || ||||| |||||||| || || || ||| Sbjct 2133 GACACCATCGACAACGTCAAAGCTAAAATCCAAGACAAGGAAGGGATCCCACCAGACCAA 2192 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||| ||||| || ||||| | | | | || |||||| ||| Sbjct 2193 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGACGGCCGCACCCTCGCCGACTACAAC 2252 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || || ||||||| ||||| Sbjct 2253 ATCCAGAAAGAGTCCACCCTCCATCTCGTCCT 2284 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || ||| | |||||| | ||| | ||| | Sbjct 2301 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACAATCACCTTGGAAGTGGAAAGCTCC 2360 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| || || ||||||||||| || || || ||||| Sbjct 2361 GACACAATCGACAATGTCAAAGCTAAAATACAAGACAAAGAAGGTATTCCCCCAGATCAG 2420 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| |||| || | || ||| ||||| || ||||||| | || | ||| ||||| || Sbjct 2421 CAACGACTTATCTTCGCCGGAAAACAGCTTGAAGATGGCCG-GACCTTAGCTGACTACAA 2479 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || ||||| || ||||||| ||||| Sbjct 2480 CATCCAGAAGGAATCCACCCTCCATCTCGTCCT 2512 >seq102355 Length=2708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| |||| || || |||| || ||||| | || | Sbjct 629 ATGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGAAGTCGAGAGTTCC 688 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 689 GATACGATCGACAATGTTAAAACGAAGATACAGGACAAGGAAGGAATTCCTCCGGATCAA 748 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || ||| ||||| |||||||| | | | || ||| || || Sbjct 749 CAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACAAT 808 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| || ||||||| || || | ||| | ||||| Sbjct 809 ATCCAAAAAGAATCGACGCTCCATCTCGTTCTCCGTCTTCGTGGAGG 855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| ||||||| | || | || Sbjct 857 ATGCAAATCTTCGTCAAAACCCTGACCGGAAAGACGATCACGTTGGAGGTGGAGAGCTCG 916 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || ||||||| ||||| ||||| || ||||||||||| Sbjct 917 GACACAATCGACAACGTGAAGACAAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAG 976 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || ||| ||||| || || || | | | | || |||||| ||| Sbjct 977 CAACGTCTCATCTTCGCCGGTAAACAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 1036 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | ||||| ||||| | ||| | ||||| Sbjct 1037 ATCCAAAAGGAGTCAACGCTTCATCTCGTCCTTCGTCTTCGTGGAGG 1083 >seq75854 Length=3247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || |||||||||||| | ||||| | || | ||| Sbjct 2568 AATGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTC 2509 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | || || ||||| |||||||||||||| || || ||||| Sbjct 2508 TGATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCA 2449 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTATA 26946 ||| | || || | | || || || | || |||| ||| ||| | || ||| |||| Sbjct 2448 ACAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAG-AACTTTAGCCGATTATA 2390 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| ||||| ||||| ||| | |||||||| |||| | || ||||| Sbjct 2389 ACATCCAAAAGGAATCGACTTTGCATCTGGTTTTGAGGTTGAGGGGAGG 2341 >seq78250 Length=3191 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 706 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATTCCTCCTGATCAG 765 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||||| | |||||| || | || |||| |||| | | ||||| || Sbjct 766 CAAAGGCTCATTTTCTCCGGCAAGCAGTTGGAGGATGGAAGAACCCTGGCGGACTACAAT 825 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||| ||||| Sbjct 826 ATCCAGAAGGAATCCACCCTTCATCTCGTCCT 857 >seq149253 Length=2080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||||||||| ||||| |||||||| ||| | |||| | || || ||| | ||| Sbjct 703 GACAAAGAAGGGATTCCTCCAGATCAACAGAGATTGATTTTTGCTGGAAAGCAATTAGAA 762 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| || || || ||||| || ||||| || || | ||||| || || Sbjct 763 GATGGAAGAACACTCGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTCTA 822 Query 26982 AGACTTAGAGGAGGAA 26997 ||| | |||||||||| Sbjct 823 AGATTGAGAGGAGGAA 838 >seq86036 Length=3019 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| ||||||| | || | || Sbjct 893 ATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACGTTGGAGGTCGAGAGCTCT 834 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || || |||||| ||||| ||||| || |||||||||||| Sbjct 833 GATACAATCGACAACGTGAAGACGAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAA 774 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| ||||| || || || | | | | || |||||| ||| Sbjct 773 CAGCGTCTCATCTTCGCCGGTAAACAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 714 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || | ||||| ||||| | ||| | ||||| Sbjct 713 ATCCAAAAGGAGTCAACGCTTCATCTCGTCCTCCGTCTTCGTGGAGG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473420388559200