Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq48246 114 3e-20 seq6274 114 3e-20 seq107321 95.1 3e-14 >seq48246 Length=4099 Score = 114 bits (126), Expect = 3e-20 Identities = 335/511 (66%), Gaps = 9/511 (2%) Strand=Plus/Minus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA-CGTTCA--TTCGCGG 22489 || |||| || || ||||||| || |||||||| | ||| || | || || | Sbjct 1787 TTGAGAAGAAAGCGAATTGGGCTCTCAAATGGAT---CGATGGCTCGGAGACGTTTGCAG 1731 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 | ||| |||| || || ||| |||||||| ||||||||||| ||| || || || | Sbjct 1730 AGCGTATTATCGCTTTCGCTTGCGTTGAAGGGATTTTCTTTTCCGGAAGCTTCTGCGCGA 1671 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | |||||| | || ||||||| | ||||| || |||| || || || || ||||| Sbjct 1670 TTTTTTGGTTGAAGAAACGTGGGTTGATGCCTGGATTAACCTTCTCGAACGAATTAATCT 1611 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTC 22669 ||||||||||| | || |||||||||||| |||| ||| || | | | | Sbjct 1610 CGCGAGATGAGGGATTACACTGTGATTTTGCGTGTTTGCTTTATGGG--TTA-CTGAAGA 1554 Query 22670 ATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTC 22729 || || | ||| || | || | | |||| || || ||||| | Sbjct 1553 CGAAGCTGAGTGAGGAACGAGTCAAGGGAATCGTCTCCGATGCGGTGGAGATTGAAAGAG 1494 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 || | ||||| || ||||| ||| | || || || | || |||||| Sbjct 1493 AGTTCGTCTGCGATGCCTTACCTTGTGCTCTTGTAGGGATGAACGGGGATCTGATGAGTG 1434 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 ||| || |||| ||||| ||| | |||| | || | || |||| || || | Sbjct 1433 AATACATCGAATTCGTTGCTGATAGGTTATTGGGTGCATTGGGATATGGGAAATTGTACA 1374 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | | | || || ||||| ||||||||||| ||||| | | || ||||||||||||| Sbjct 1373 ATGCCCAGAACCCGTTTGATTGGATGGAACTGATTTCGTTACAGGGGAAGACCAATTTCT 1314 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 |||| ||||| |||||||| || || ||||| Sbjct 1313 TCGAGAAAAGGGTTGGTGAGTATCAGAAAGC 1283 >seq6274 Length=8207 Score = 114 bits (126), Expect = 3e-20 Identities = 210/304 (69%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || |||| ||| || | || | |||||| |||| | Sbjct 5097 ATGAAAGATGATAGCATTGAAGGCATCTATGATACTTTAAAAGAATGTGCTGTTATCAGC 5038 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||||| || |||||||| || | || ||| | | ||| | | | |||||||| Sbjct 5037 AAATCAGCAGGGGGTATTGGTGTCTCTGTGCATAATATCAGAGCAACTGGA-AGTTACAT 4979 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || |||||| ||| || ||||| | |||| ||| | ||||||||| | | || Sbjct 4978 ACGTGGCACAAATGGAACATCTAATGGTATTATTCCAATGTTGCGTGTGTTTAATGACAC 4919 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| | || || ||||| || || || || | || || || |||||| | ||| | || Sbjct 4918 TGCTCGATATGTTGACCAAGGAGGTGGTAAAAGAAAGGGTGCATTTGCTGTTTATTTGGA 4859 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG-AGG 363919 || ||||| ||||| |||||||||||||| | |||||||| ||||| | || Sbjct 4858 ACCATGGCATGCTGATATCTTTGAGTTTCTTGATTTGAGGAAAAACCATGGAAAGGTAGC 4799 Query 363920 AATT 363923 |||| Sbjct 4798 AATT 4795 >seq107321 Length=2628 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 22765 GGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATT 22824 || || || ||||| ||||| |||||||| | ||||| |||||||| ||| ||| Sbjct 1413 GGGATGAACGCCGATCTTATGAGCACATATATCGAGTTTGTAGCAGATCG---ATTGATT 1469 Query 22825 T---CACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTT 22881 | | || || | ||| || || || || |||||||| ||||||||||| Sbjct 1470 GGTGCTTTGGGATACGGGAAGATGTACAATGTTCAGAACCCATTTGATTGGATGGAACTG 1529 Query 22882 ATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCA 22941 |||||| | | || ||||||||||||||||| || || || || |||||||| || ||| Sbjct 1530 ATTTCATTGCAGGGTAAGACCAATTTCTTCGAGAAGAGGGTCGGCGAATACCAGAAGGCA 1589 Query 22942 GGTGTTATG 22950 ||| ||| Sbjct 1590 TCTGTCATG 1598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288723248118020