Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq149253 113 4e-20 seq90319 107 2e-18 seq27206 104 2e-17 seq40887 98.7 8e-16 seq102355 95.1 1e-14 seq75854 91.5 1e-13 seq78250 89.7 4e-13 seq50039 86.0 5e-12 seq48514 86.0 5e-12 seq86036 84.2 2e-11 >seq149253 Length=2080 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| || ||||| |||||||||||| |||||| | || |||||| | ||| Sbjct 703 GACAAAGAAGGGATTCCTCCAGATCAACAGAGATTGATTTTTGCTGGAAAGCAATTAGAA 762 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| || ||||| ||||| || ||||| || ||| ||||| | || || Sbjct 763 GATGGAAGAACACTCGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTCTA 822 Query 24204 AGATTGAGAGGAGGA 24218 ||||||||||||||| Sbjct 823 AGATTGAGAGGAGGA 837 >seq90319 Length=2932 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || |||||| | || ||| | || || ||| | | Sbjct 1397 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACCATCACCTTGGAGGTGGAGAGCTCC 1338 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 1337 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAA 1278 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || ||| || || || ||||| | ||||| | || ||| || ||| Sbjct 1277 CAGAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCAGAACCCTCGCCGACTACAAC 1218 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| || | ||||| || Sbjct 1217 ATCCAGAAGGAATCAACCCTCCATTTGGT 1189 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | || || |||| ||||| | | Sbjct 1625 ATGCAAATATTCGTCAAAACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAAAGCTCC 1566 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| ||||| || || || ||||| Sbjct 1565 GACACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGATCAG 1506 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || || || ||||| | | | | | || ||| || ||| Sbjct 1505 CAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCCGTACCCTCGCCGACTACAAC 1446 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || | ||||| || Sbjct 1445 ATCCAAAAGGAGTCAACCCTCCATTTGGT 1417 >seq27206 Length=5223 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || ||||| || ||| | || || | || || || Sbjct 3058 AATGCAGATCTTCGTCAAGACGTTAACCGGGAAAACAATCACTCTAGAGGTTGAAAGTTC 2999 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| |||||| ||||||||||| || || || ||||| Sbjct 2998 TGATACGATCGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGGATTCCACCGGATCA 2939 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||| | ||||| | | ||| ||||| | ||||||| |||| | | ||| ||||||| Sbjct 2938 ACAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAAGATGGTAGAA-CTTTAGCTGATTATA 2880 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| ||||| || | ||| | || | |||||||| ||||| Sbjct 2879 ACATTCAAAAGGAATCGACTTTGCATCTTGTTCTGAGATTGAGGGGAGG 2831 >seq40887 Length=4418 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| || | || ||||| |||| || ||||||||||| | Sbjct 1845 ATGCAGATCTTCGTAAAGACTCTCACCGGAAAGACGATCACTCTCGAAGTCGAGAGCTCA 1904 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||| || ||||| ||||| || || || || ||| Sbjct 1905 GATACCATTGACAACGTCAAGGCAAAAATCCAGGACAAGGAAGGGATTCCCCCAGACCAA 1964 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || ||| ||||| || ||||| | | | | | | |||||| ||| Sbjct 1965 CAAAGGCTTATCTTCGCCGGAAAGCAGCTAGAAGACGGCCGCACCTTGGCCGATTACAAC 2024 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||| | || | ||||||||||||| Sbjct 2025 ATCCAAAAGGAATCAACTCTTCACCTCGTTCTTCGATTGAGAGGAGG 2071 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || |||||| | || ||| | |||||||| | Sbjct 2073 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCTTGGAAGTCGAAAGCTCT 2132 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || || ||||| ||||| || || || || ||| Sbjct 2133 GACACCATCGACAACGTCAAAGCTAAAATCCAAGACAAGGAAGGGATCCCACCAGACCAA 2192 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| || || || ||||| | | | | | || ||| || ||| Sbjct 2193 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGACGGCCGCACCCTCGCCGACTACAAC 2252 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| || || Sbjct 2253 ATCCAGAAAGAGTCCAC 2269 >seq102355 Length=2708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || |||| || ||||||||||| | Sbjct 629 ATGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGAAGTCGAGAGTTCC 688 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 689 GATACGATCGACAATGTTAAAACGAAGATACAGGACAAGGAAGGAATTCCTCCGGATCAA 748 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||| || || |||||||| | | | | || |||||| || Sbjct 749 CAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACAAT 808 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 809 ATCCAAAAAGAATCGAC 825 >seq75854 Length=3247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || |||||||||||| | || || | || || || Sbjct 2568 AATGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTC 2509 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | || || ||||| ||||||||||| || || || ||||| Sbjct 2508 TGATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCA 2449 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||| | ||||| | | || ||||| | || |||| |||| | | ||| ||||||| Sbjct 2448 ACAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGAA-CTTTAGCCGATTATA 2390 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||| ||||| || | ||| | || || || ||||| ||||| Sbjct 2389 ACATCCAAAAGGAATCGACTTTGCATCTGGTTTTGAGGTTGAGGGGAGG 2341 >seq78250 Length=3191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | |||||| | || |||||| Sbjct 647 ATGCAA-TCTTCGTCAAAACCCTCACCGGCAAAACCATTACCTTAGAGGTCGAGAGTTCG 705 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 706 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATTCCTCCTGATCAG 765 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| | ||||||||| | || |||| |||| | | || || || Sbjct 766 CAAAGGCTCATTTTCTCCGGCAAGCAGTTGGAGGATGGAAGAACCCTGGCGGACTACAAT 825 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| || ||||| Sbjct 826 ATCCAGAAGGAATCCACCCTTCAT 849 >seq50039 Length=4031 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| |||| || ||| | || ||| | || || || || | Sbjct 1214 ATGCAGATTTTCGTAAAAACCCTAACCGGGAAAACCATCACCCTAGAGGTAGAATCCTCC 1155 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || || ||||| |||||||| || || ||||| Sbjct 1154 GACACCATCGACAATGTCAAAGCGAAAATCCAAGACAAGGAAGGCATCCCACCGGATCAG 1095 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | || ||| || || || || || ||||||| | | ||| || ||| Sbjct 1094 CAACGTCACATCTTCGCCGGAAAACAGCTGGAGGACGACAGAACCCTAGCCGACTACAAC 1035 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 1034 ATCCAGAAGGAATCCAC 1018 >seq48514 Length=4088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || |||||||||||| | | || | || || || | Sbjct 3169 AATGCAGATCTTCGTCAAGACGTTAACTGGAAAAACAGTCACACTGGAGGTTGAAAGCTC 3110 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | || ||||| | || || ||||| ||||||||||| || || || ||||| Sbjct 3109 TAATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCA 3050 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| | ||||| | || || ||||| | ||||||| |||| | | ||| ||||||| Sbjct 3049 ACAACGTCTGATCTTCGTTGGTAAGCAGTTGGAAGATGGTAGAA-CTTTAGCTGATTATA 2991 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||| ||||| || | ||| | || | || ||||| ||||| Sbjct 2990 ACATCCAAAAGGAATCCACTTTGCATCTGGTTCTGAGGTTGAGGGGAGG 2942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || || || ||| || | || || ||| | Sbjct 2940 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACGACCACTTTAGAGGTAGAGAGCTCG 2881 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| || || || || || || || |||||| Sbjct 2880 GACACCATTGATAATGTGAAGGCAAAGATTCAGGATAAGGAGGGGATTCCGCCTGATCAA 2821 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||| || |||||||| |||| | | || ||||| || Sbjct 2820 CAGAGGCTTATATTTGCTGGGAAGCAGCTTGAAGATGAGAGAA-CTTTGGCTGATTACAA 2762 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| ||||| || Sbjct 2761 CATTCAAAAGGAATCAAC 2744 >seq86036 Length=3019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| || | || |||||| | Sbjct 893 ATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACGTTGGAGGTCGAGAGCTCT 834 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || |||||| ||||| ||||| || |||||||||||| Sbjct 833 GATACAATCGACAACGTGAAGACGAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAA 774 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| || || || || || | | | | | || ||| || ||| Sbjct 773 CAGCGTCTCATCTTCGCCGGTAAACAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 714 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || ||||| || || || ||||| Sbjct 713 ATCCAAAAGGAGTCAACGCTTCAT 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425345319397050