Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq27206 104 2e-17 seq57017 86.0 5e-12 seq149253 84.2 2e-11 seq75854 82.4 6e-11 >seq27206 Length=5223 Score = 104 bits (114), Expect = 2e-17 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 ||||| || ||||||||||| ||||| || || ||||||||| | ||| || |||| | Sbjct 3285 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATTACCTTGGAAGTCGAGAGTTCT 3226 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| ||| || ||||| ||||| ||||| |||| Sbjct 3225 GATACAATC---GACAACGTTAAAGCAAAGATCCAGGATAAGGAAGGGATCCCCCCTGAT 3169 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| || || | || || ||||| || ||||| | || |||| | || ||||| Sbjct 3168 CAGCAAAGGCTCATATTCGCCGGGAAACAGTTGGAAGACGGCAGAACCCTAGCGGATTAC 3109 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 || ||||| || || || ||| | ||| Sbjct 3108 AATATTCAGAAGGAATCGACTCTTCAT 3082 >seq57017 Length=3783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA--CGGAGTCCA 115343 ||||| || || ||||||| ||||| || || |||||||| | || | ||||||| Sbjct 1286 ATGCAGATCTTCATCAAAACCCTCACCGGCAAGACCATTACGTTGGAGGTCCAGAGTCCA 1227 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || | | |||| || || ||| ||| || ||||| | || ||||| Sbjct 1226 G--ATACCATCGACAAAGTCAAGGCCAAGATTCACGACAAGGAAGGTATTCCTCCTGATC 1169 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| ||||||| || || || || || ||||| | ||||||| || | || || | Sbjct 1168 AGCAAAGGCTTATTTTCGCCGGAAAGCAGTTGGAAGAAGGCAAAACCCTGTCGGACTACA 1109 Query 115464 ACATTCAAAAAGAGTCTACT 115483 | |||||||| || || ||| Sbjct 1108 ATATTCAAAAGGAATCCACT 1089 >seq149253 Length=2080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || |||||||| | || ||||| || ||| | |||| ||| || || ||||||||| Sbjct 703 GACAAAGAAGGGATTCCTCCAGATCAACAGAGATTGATTTTTGCTGGAAAGCAATTAGAA 762 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | || ||||| ||||| || |||||||| || | ||| | || | Sbjct 763 GATGGAAGAACACTCGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTCTA 822 Query 115499 AGATTGCGAGGAGGAA 115514 |||||| ||||||||| Sbjct 823 AGATTGAGAGGAGGAA 838 >seq75854 Length=3247 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 ||||| || || |||||||| ||||| || || || |||||| | ||| || |||| | Sbjct 2795 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATTACCTTAGAAGTCGAGAGTTCT 2736 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| || ||| ||||||||||| | || |||| Sbjct 2735 GATACAATC---GACAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCCTGAT 2679 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | || || || || |||||||||| || |||| | || || || Sbjct 2678 CAGCAGAGACTCATATTCGCCGGAAAGCAGTTAGAAGATGGCAGAACCTTAGCGGACTAC 2619 Query 115463 AACATTCAAAAAGAGTCTAC 115482 || || || || || || || Sbjct 2618 AATATCCAGAAGGAATCCAC 2599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420802350893200