Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq40887 122 7e-23 seq107820 113 4e-20 seq90319 111 1e-19 seq86036 107 2e-18 seq102355 104 2e-17 seq50039 100 2e-16 seq161151 95.1 1e-14 seq90807 95.1 1e-14 seq35420 87.8 1e-12 seq26754 86.0 5e-12 >seq40887 Length=4418 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||| || || |||||||| || |||||||||||||| Sbjct 2984 CCCACCACGGAGCCGGAGAACCAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGC 2925 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | |||||||||| ||||| || || | ||||||| ||| |||||| || Sbjct 2924 CAACGTCCGGCCGTCCTCCAACTGTTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 2865 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || || || || |||||| ||||| | | | |||||| | || Sbjct 2864 GATCCCTTCCTTATCTTGGATCTTTGCT--TTCACATTATCGATGGTGTCGGAGCTTTCA 2807 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| |||||||||||||||| || || ||||| |||||||| Sbjct 2806 ACTTCCAAGGTAATGGTTTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 2757 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| || ||||| ||||| ||| Sbjct 2755 CCTCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTATAGTCCGCC 2696 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | ||||| || || | || || || || ||||| || Sbjct 2695 AATGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGA 2636 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||||| ||| || || | | | | |||||| | ||| Sbjct 2635 ATACCTTCCTTGTCTTGAATTTTAGCT--TTGACGTTGTCAATGGTGTCGGAGCTTTCCA 2578 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| ||||||||||||| ||||| ||||| |||||||| Sbjct 2577 CTTCCAAGGTGATTGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 2529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||| ||||| || ||||||||||| || Sbjct 2527 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 2468 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | ||||| || || | ||||| || || || || || Sbjct 2467 AAGGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATAAGTCGTTGCTGATCTGGGGGA 2408 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| |||| ||| || || | | | | |||||| | ||| Sbjct 2407 ATACCTTCTTTGTCTTGTATTTTAGCT--TTGACATTGTCGATTGTGTCGGAGCTTTCCA 2350 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 2349 CTTCCAAGGTGATTGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 2301 >seq107820 Length=2620 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | |||| || ||||| Sbjct 2039 AGAACCAGGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCTGCCGTCC 2098 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || ||||||| ||||| |||||| || | ||| || ||||| Sbjct 2099 TCAAGTTGTTTCCCGGCGAAAATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCT 2158 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | | |||||| || || |||| || || || Sbjct 2159 TGGATCTTCGCCTTCACATTGTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATCGTC 2218 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || ||||| || || ||||||||||| Sbjct 2219 TTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTT 2253 >seq90319 Length=2932 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || || ||||| || |||||||||||||| | |||| || |||| Sbjct 1186 AGGACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCT 1245 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || | | ||||||||| || | || || ||||| Sbjct 1246 TCTAGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 1305 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| | |||| |||| |||||||| Sbjct 1306 TGGATCTTGGC--CTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGG 1363 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||||| ||||| ||||| |||||||| Sbjct 1364 TTTTTCCGGTCAAGGTTTTCACAAAGATCTGCAT 1397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | ||||||| || | || ||||| |||||||| || |||||||| || || Sbjct 942 CCCTCCCCTCAGCCTCAACACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 1001 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | |||| || | |||||| || || | || | || ||| ||||| || Sbjct 1002 CAAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGG 1061 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| || | | |||||| | | | | |||||| | |||| Sbjct 1062 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCAC 1121 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || |||| || || || ||||||||||| Sbjct 1122 CTCCAAAGTAATCGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 1169 >seq86036 Length=3019 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| ||||| ||||||||||| |||||||||||||| Sbjct 667 CCTCCACGAAGACGGAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCG 726 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||||| || || | || || |||||||| || ||| Sbjct 727 AGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGCTGTTGATCGGGAGGG 786 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | | |||||| | | | | || || | ||| Sbjct 787 ATTCCTTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATTGTATCAGAGCTCTCGACC 846 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || |||||||| || |||||||| || |||||||| Sbjct 847 TCCAACGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 893 >seq102355 Length=2708 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| ||||| ||||||||||| |||||||||||||| Sbjct 1083 CCTCCACGAAGACGAAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1024 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||||| || || | || || || || || || ||| Sbjct 1023 AGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGG 964 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | |||||| | | | | ||||| | |||| Sbjct 963 ATTCCTTCCTTGTCTTGAATCTTTGTCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACC 904 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||||||||| |||||||| || || ||||| Sbjct 903 TCCAACGTGATCGTCTTTCCGGTCAGGGTTTTGACGAAGATTTGCAT 857 >seq50039 Length=4031 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || |||||||||||||| | |||| || ||||||||| ||| Sbjct 1012 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGT 1071 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || | || || || ||| || | ||| || ||||| |||| | Sbjct 1072 TTTCCGGCGAAGATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTC 1131 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 || || | | | | |||||| || || || | |||||||||||| ||||| Sbjct 1132 GCTTTGACATTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTT 1191 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||||||||| Sbjct 1192 AGGGTTTTTACGAAAATCTGCAT 1214 >seq161151 Length=1962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | |||| || ||||||| | || Sbjct 1296 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGC 1355 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || || |||||||| || | |||||| ||||| || ||| Sbjct 1356 TTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTT 1415 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | ||||| || ||| |||| ||||| || || || | Sbjct 1416 GCT--TTCACATTGTCGATCGTGTCAGAGGACTCTACCTCCAACGTGATCGTCTTACCCG 1473 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 1474 TTAGGGTTTTCACGAAGATCTGCAT 1498 >seq90807 Length=2923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/255 (68%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 16683 ATGTATTATTGTTTAGCCGCATTTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGG 16742 |||| || || ||| || | || || || || || | || |||| || || || | Sbjct 1433 ATGTCTTCTTCTTTCGCTTCTTTGCGCCACCACGGAGACGGAGGACCAAGTGGAGAGTCG 1374 Query 16743 ACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCAT 16802 ||||||| || |||||||||||||| | ||| | |||| || | || || || || Sbjct 1373 ACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCAAGCTGCTTTCCGGCGA 1314 Query 16803 AAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCT 16862 | || || |||||||||||| || | ||| || ||||| || | | |||||| | Sbjct 1313 AGATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACAT 1254 Query 16863 GGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGA 16922 | | | |||||| || || |||| |||||| || || || || || ||||| | Sbjct 1253 TGTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTACCCGTTAGGGTTTTCA 1194 Query 16923 CAAAAATCTGCATTT 16937 | || |||||||||| Sbjct 1193 CGAAGATCTGCATTT 1179 >seq35420 Length=4697 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||| || || | ||| || || ||||| || || |||||||||||||| Sbjct 1448 CCTCCCCTTAGCCTAAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCGGCA 1389 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | || || || || | ||||||| ||| ||||| || Sbjct 1388 AGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGG 1329 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | | |||||| | || Sbjct 1328 ATGCCTTCCTTGTCTTGGATTTTGGCT--TTCACGTTGTCGATGGTGTCGGAGCTTTCGA 1271 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCC 16944 || | ||||||||| || ||||| || || || || || || |||| | ||||||| Sbjct 1270 CCTCTAGGGTGATGGTCTTACCGGTGAGGGTCTTAACGAAGATTTGCA-TCTGTAGCC 1214 >seq26754 Length=5255 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || || |||||||| |||| |||| | | ||| Sbjct 445 AGGACGAGATGAAGGGTGGATTCCTTCTGGATATTGTAGTCCGCCAGGGTTCTTCCATCC 386 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| ||||| | |||| |||| ||| || || || | || | ||| || Sbjct 385 TCCAATTGCTTGCCAGAGAAAATGAGCCTCTGCTGATCAGGGGGAATACCTTATTTTTCC 326 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||||| | | | | ||||| | ||| |||| || ||||| Sbjct 325 TGAATCTTCGTTTTCACGTTGTCGATTGTGTCAGAAGTCTCGACCTCCAACGTAATGGTC 266 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| ||||| |||||||| Sbjct 265 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400762636168900