Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq48246 176 6e-39 seq6274 143 3e-29 seq23164 122 1e-22 >seq48246 Length=4099 Score = 176 bits (194), Expect = 6e-39 Identities = 592/907 (65%), Gaps = 26/907 (3%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| || | ||| ||||| ||||| || || || | ||| || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||| |||| || || || |||| || | ||| | |||||||| || | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || ||||| || || ||||| || ||| |||||| || | ||||| |||| ||| Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 32549 TTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || | || || | | | || ||| |||||| ||||| || | | | Sbjct 1465 AGCACAAGGTA-AGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGA 1523 Query 32608 TAGATCTTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATG 32664 | | ||| ||| |||||| | | | || ||| | || || |||| | Sbjct 1524 TTCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACACG 1580 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 | ||||| ||||||| ||||| |||| ||||||||||| || || || | ||| | Sbjct 1581 CAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAG 1640 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 32783 |||| | ||||| || || | |||||| || | |||| || ||| ||||||||||| Sbjct 1641 GCATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCATGTATCC 32841 ||||| || || || || |||| | |||| || ||| | || | ||| |||| Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCA-AACGTCTCCG-AGCCATCGATCC 1757 Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 | || ||||||||| || ||||| | ||||| || || ||||| || || |||| Sbjct 1758 ATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGA 1817 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAAT-CAAAAG---ACTATACATT 32957 | | |||| |||||| || || |||||| | | || ||| ||| ||||| Sbjct 1818 GTCTGCTTTTCTCATTAGAGTCCTT----TATGTAGGATTCCAGAAGCAAACTGTACATC 1873 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || || || || ||||| || || |||||||||||| | ||||| | || Sbjct 1874 TCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACT 1933 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || ||| | |||||| | |||| ||||| || || || || ||| || Sbjct 1934 TGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCG 1993 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT-- 33135 || || || | || || | ||||| | | ||| | ||| | | ||| | Sbjct 1994 AAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGA 2053 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 | ||| ||||| ||| | ||| || ||||| |||||||||| || || || || || | Sbjct 2054 CGTTG--ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCT 2111 Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 | ||||| | ||| || | | | || |||||||| || ||| || | || ||| ||| Sbjct 2112 TGTACATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTG 2171 Query 33256 TTGCAAG 33262 ||||| Sbjct 2172 GAGCAAG 2178 >seq6274 Length=8207 Score = 143 bits (158), Expect = 3e-29 Identities = 211/297 (71%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 63157 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 ||| || ||| | | ||||||| |||||| |||||||| || | || || | || Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGC---AAATGCA-- 4879 Query 63217 CCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63271 || ||| ||| ||||| || || | |||| ||| |||| |||| | || | |||| Sbjct 4880 CCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAAC 4939 Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 ||||||||||||||||| ||||| ||||| || || || || |||||| | || | Sbjct 4940 ATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTG 4999 Query 63332 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 |||||| | || | ||| || |||||||| ||| ||| | || ||| |||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTT 5059 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || |||||||||||||| || || |||||||| ||||| | || ||||||||| Sbjct 5060 AAAGTATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| ||||| || || || |||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| ||| | || || ||||| | ||||||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || || |||||||||||||| | | | | || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| || || | || | || || | |||| | || | ||||||||||| ||||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || || ||||||||| | |||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGAT 63405 | || ||||| |||| | | || | | |||| || ||| ||||| || ||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 | || || || ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626692858356000