Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04]
876,110 sequences; 1,133,657,130 total letters
Query= NC_008725.1
Length=111953
Score E
Sequences producing significant alignments: (Bits) Value
seq64326 96.9 2e-15
seq129439 82.4 5e-11
>seq64326
Length=3552
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892
|||||| |||||||| || || ||||| || ||||| || ||| |||| ||| | |
Sbjct 2844 AATGCAGATATTTATCAAGACGTTAACTGGGAAAACGATCACCCTGGAGGTTGAAACTTC 2785
Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952
|| | | | | | || | ||| || || || || || || | ||| | | ||
Sbjct 2784 TGATATGATTGACAATGTCAAGGCTAAGATACAAGAAAAGGAAGGGATCCCTCCAGATCA 2725
Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012
||||| ||||||||| | |||||||| ||||||||| ||| | || |||||||
Sbjct 2724 GCAGAGGCTTATCTTTTCCGGCAAACAGCTAGAAGATGGGCGTACTCTTGCTGATTACAG 2665
Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060
|| ||||||||||||||| || ||| | || | ||| | || || ||
Sbjct 2664 TAGTCAGAAGGAATCTACGCTGCATCTCGTCCTCCGTCTTCGTGGCGG 2617
>seq129439
Length=2310
Score = 82.4 bits (90), Expect = 5e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012
||||||| | || |||||||| || ||| |||||||| | |||| | || ||||||||
Sbjct 2310 ACAGAGATTAATTTTTGCTGGAAAGCAATTAGAAGATGGCAGAACTCTTGCTGATTACAA 2251
Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042
|| ||||||||||| || |||||| ||||
Sbjct 2250 CATCCAGAAGGAATCCACGCTTCATTTGGT 2221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354300889992940
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |