Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq102355 131 1e-25 seq86036 116 3e-21 seq90807 113 4e-20 seq40887 109 5e-19 seq50039 104 2e-17 seq107820 95.1 1e-14 seq27206 95.1 1e-14 seq90319 91.5 1e-13 seq75854 89.7 4e-13 seq48514 89.7 4e-13 seq35420 84.2 2e-11 >seq102355 Length=2708 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | ||| ||||||||||| || ||||||||| Sbjct 858 ATGCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCG 799 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||| || |||||||| ||| |||| ||||| ||||| |||||| Sbjct 798 GCGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGA 739 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| ||| || |||||| | | || | || |||| || Sbjct 738 GGAATTCCTTCCTTGTCCTGTATC-TTCGTTTTAACATTGTCGATCGTATCGGAACTCTC 680 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | ||| || || || || ||||| |||||||||||||| Sbjct 679 GACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 >seq86036 Length=3019 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||| || || ||||| |||||||| ||| Sbjct 664 ATACCTCCACGAAGACGGAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCG 723 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| || ||||| |||||||| ||| |||||||||||||||| || ||| Sbjct 724 GCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGCTGTTGATCGGGA 783 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | || | || || | | ||| Sbjct 784 GGGATTCCTTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATTGTATCAGAGCTCTCG 843 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | ||| || ||||| || ||||| || || ||||||||| || Sbjct 844 ACCTCCAACGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCATGCCT 897 >seq90807 Length=2923 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || | | |||||||| || || || Sbjct 1377 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCAAGCTGCTTTCCG 1318 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| |||||||||||||| ||||||||||| ||||| ||||| || Sbjct 1317 GCGAAGATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTC 1258 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| |||||| || |||| ||| | ||| || || || || ||| Sbjct 1257 ACATTGTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTACCCGTTAGGGTT 1198 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1197 TTCACGAAGATCTGCAT 1181 >seq40887 Length=4418 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | || | ||| | || ||||| || || |||||||| || Sbjct 2530 ATACCTCCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 2471 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || || ||||||||| ||||| || ||| |||| || || || || || || Sbjct 2470 GCTAAG-GTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATAAGTCGTTGCTGATCTGG 2412 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| || || ||| | | || | ||||||| | ||| Sbjct 2411 GGGAATACCTTCTTTGTCTTGTATTTTAGCTTTGACATTGTCGATTGTGTCGGAGCTTTC 2352 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||| ||||| ||||| || || |||||||||||| Sbjct 2351 CACTTCCAAGGTGATTGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCATG 2300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| |||||||||||| || || || ||||| || || || || Sbjct 2041 GTTGATTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCTAGCTGCTTTCCG 1982 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | |||||||| || ||||| ||||| ||||| || ||| || Sbjct 1981 GCGAAGATAAGCCTTTGTTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATTTTTGCCTTG 1922 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | ||||| || | || | ||| || ||||| ||||| Sbjct 1921 ACGTTGTCAATGGTATCTGAGCTCTCGACTTCGAGAGTGATCGTCTTTCCGGTGAGAGTC 1862 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 1861 TTTACGAAGATCTGCAT 1845 >seq50039 Length=4031 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || | || || || ||||| || Sbjct 1018 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCG 1077 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||| |||| || || ||||| || |||||||| ||||| || || ||| Sbjct 1078 GCGAAGATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTG 1137 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| |||||| || || | ||| | ||||| ||||| || ||| Sbjct 1138 ACATTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTT 1197 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| ||||||||||| Sbjct 1198 TTTACGAAAATCTGCAT 1214 >seq107820 Length=2620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||||||||| || ||| | || |||||||| |||||||| || |||||||| ||| Sbjct 2096 TCCTCAAGTTGTTTCCCGGCGAAAATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTG 2155 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | ||||||| |||||| || |||| || | | Sbjct 2156 TCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATC 2215 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || ||||| || || |||||||| Sbjct 2216 GTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCAT 2250 >seq27206 Length=5223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||| ||| || | || | || ||| | ||| | || || || |||||||| ||||||| Sbjct 2598 AAACACCACCTCTAAGACGCAGAACAAGATGCAGAGTGGACTCCTTTTGAATATTGTAAT 2657 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | || ||| || ||||||||| || |||||||| | || || | |||||| || | Sbjct 2658 CAGCCAAAGTCCGCCCATCTTCAAGCTGCTTACCAGCAAATATAAGCCTCTGTTGATCAG 2717 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| || || ||||| ||||||| || | | |||| || || | | | Sbjct 2718 GCGGAATACCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATCGTATCCGAGCTCT 2777 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | ||| || || |||| || || |||||||||||||| Sbjct 2778 CAACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAG 114225 ||||| ||| | ||| | || ||||| ||||||||||| ||||| ||| | ||| | | Sbjct 2842 TCTCAGAACAAGATGCAAAGTCGATTCCTTTTGAATGTTATAATCAGCT-AAAGTTCTAC 2900 Query 114226 AATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTT 114285 |||||| | || || || || |||| ||||||||||| ||||| ||||| ||||||| Sbjct 2901 CATCTTCCAACTGCTTCCCGGCAAAGATCAGACGCTGTTGATCCGGTGGAATCCCTTCTT 2960 Query 114286 TGTCGGCAATCTT 114298 |||| |||||| Sbjct 2961 TGTCTTGAATCTT 2973 >seq90319 Length=2932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || ||||| || | || | ||| || || || || ||||||||||| || ||| || Sbjct 952 AGCCTCAACACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCGG 1011 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||||||||||| || ||| |||| | | ||| ||||| || || || || || Sbjct 1012 CCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCC 1071 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| || | | |||| |||||||| | || || |||| || Sbjct 1072 TTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTA 1131 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || || |||| || || || ||||||||||| Sbjct 1132 ATCGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 1169 >seq75854 Length=3247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227 |||||||| | ||| | || ||||| ||||| ||||| |||||| | ||| | | | Sbjct 2353 CTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCGGCTAAAGTTCTACCA 2412 Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || | || || ||||| |||| ||||||||||| ||||| ||||| ||||||||| Sbjct 2413 TCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCGGTGGAATCCCTTCTTTG 2472 Query 114288 TC 114289 || Sbjct 2473 TC 2474 >seq48514 Length=4088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||||||||||||||| || ||| | ||||||||| || || ||| Sbjct 2744 GTTGATTCCTTTTGAATGTTGTAATCAGCCAAAGTTCTCTCATCTTCAAGCTGCTTCCCA 2803 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || | |||||| || || ||||| || || || || ||||||| || Sbjct 2804 GCAAATATAAGCCTCTGTTGATCAGGCGGAATCCCCTCCTTATCCTGAATCTTTGCCTTC 2863 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | || ||| || || |||| || Sbjct 2864 ACATTATCAATGGTGTCCGAGCTCTCTACCTCTAAAGTGGTCGTCTTCCCTGTCAATGTC 2923 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 2924 TTCACAAAAATCTGCAT 2940 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGA 114226 |||| ||| | ||| | || ||||| ||||| ||||| ||||| ||| | ||| | | Sbjct 2954 CTCAGAACCAGATGCAAAGTGGATTCCTTTTGGATGTTATAATCAGCTAA-AGTTCTACC 3012 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | || |||||| || |||| ||||| ||||| ||||| ||||| |||||||| Sbjct 3013 ATCTTCCAACTGCTTACCAACGAAGATCAGACGTTGTTGATCCGGTGGAATCCCTTCTTT 3072 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| || | | || | || | | | ||| || |||| || || Sbjct 3073 GTCCTGTATCTTAGCCTTCACATTGTCGATCGTATTAGAGCTTTCAACCTCCAGTGTGAC 3132 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || | || || || || |||||||| Sbjct 3133 TGTTTTTCCAGTTAACGTCTTGACGAAGATCTGCAT 3168 >seq35420 Length=4697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 114147 TTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 || ||| | || |||||||| | | ||| | || | || || || || |||||||| Sbjct 2369 TTTCAATTTCCTCCACGTAGACGAAGAACAAGGTGGAGGGTTGACTCCTTCTGAATGTTA 2310 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 || || | || || ||| ||||| || || || ||| |||| || | ||| || Sbjct 2309 TAGTCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGA 2250 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 ||||| || || ||||| || || ||| || || | | |||| |||||| | | Sbjct 2249 TCCGGTGGGATACCTTCCTTATCCTGAATTTTCGCCTTCACATTGTCAATGGTGTCAGAG 2190 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || |||| || | ||| || || |||| ||| || |||||||||||||| Sbjct 2189 CTTTCCACCTCCAATGTTATCGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415648376869320