Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq107321 163 5e-35 seq48246 120 6e-22 >seq107321 Length=2628 Score = 163 bits (180), Expect = 5e-35 Identities = 480/730 (66%), Gaps = 20/730 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| || || || || || ||||| ||| |||||||| Sbjct 867 CTCGCATTCTTCGCCGCCTCCGATGGAATCGTATTGGAAAACCTCGCCGGACGGTTCATG 926 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||||||| || | || |||||||| ||||||||| |||||||| || || |||| Sbjct 927 AAAGAGGTCCA--AGTTGCGGAGGCGCGTGCCTTCTACGGATTCCAGATCGCAATCGAGA 984 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | ||||| ||| ||||| || ||| | | |||||| || || |||| Sbjct 985 ACATCCACTCCGAGATGTACAGTCTGCTTCTCGAATCATACATCAAAGACTCCAACGAGA 1044 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | ||||||| || || || || || || |||||| ||||||| || | |||| Sbjct 1045 AGAGTAGGCTGTTTCGCGCAATCGATACCATCCCTTGCATCCAGAAGAAAGCTAAATGGG 1104 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | |||| |||||||| | | || ||| |||| || || | | || || | Sbjct 1105 CCCTCAGATGGATCGATGGATCTGA---AACCTTCGCAGAACGGATCATCGCTTTCGCTT 1161 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA--GAA 42778 |||||| || ||||||||||| ||| ||| | |||| ||||||||||| | || Sbjct 1162 GCGTCGAAGGTATCTTCTTCTCCGGCAGTTTCTGCGCCATATTCTGGCTCAAAAAACGAG 1221 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 || | ||||| || || || |||||||||||| | ||| | |||||||| |||| Sbjct 1222 GGCTT--ATGCCAGGGCTAACATTCTCGAACGAATTGATCTCGCGAGACGAGGGTTTGCA 1279 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 | ||||| || ||| | || | | |||| | | | |||| | ||||| Sbjct 1280 CTGTGACTTCGCGTGCTTGCTTTAC---AGCCTGTTGAAGATGAAGCTGAGTGAAGAGCG 1336 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 || ||| ||| | | || || || ||||| |||| ||| ||| || | | | Sbjct 1337 AGTGAAGGCAATCGTGGCTGATGCTGTAGAGATTGAGAGGGAATTCGTCTGTGAAGCATT 1396 Query 42959 GCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | |||||| |||| || |||||| ||| || ||| ||| || ||| ||| || | Sbjct 1397 G-CCGTGTGGGTTGGTGGGGATGAACGCCGATCTTATGAGCACATATATCGAGTTTGTAG 1455 Query 43018 CCGACCATCTCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTT 43075 | || | | | |||| |||| | | | ||||| | | ||| || Sbjct 1456 CAGATCGATTGATTGGTGC--TTTGGGATACGGGAAGATGTACAATGTTCAGAACCCATT 1513 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 || | ||||| || || ||| |||| |||||||| || ||||||||| | |||| Sbjct 1514 TGATTGGATGGAACTGATTTCATTGCAGGGTAAGACCAATTTCTTCGAGAAGAGGGTCGG 1573 Query 43136 CGACTACCAG 43145 ||| |||||| Sbjct 1574 CGAATACCAG 1583 >seq48246 Length=4099 Score = 120 bits (132), Expect = 6e-22 Identities = 268/398 (67%), Gaps = 7/398 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| || ||||| || || ||||| ||| | |||||| Sbjct 2004 CTTGCCTTCTTCGCCGCCTCCGATGGCATCGTTTTGGAAAACCTAGCCGGACGATTCATG 1945 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||||||| || | || |||||||| ||||||||| |||||||| ||||| |||| Sbjct 1944 AAAGAGGTTCA--AGTTGCGGAGGCGCGTGCCTTCTACGGATTCCAGATTGCCATCGAGA 1887 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 | | ||||| ||| ||||| || || | | ||||| ||| | ||| Sbjct 1886 ATATCCACTCCGAGATGTACAGTTTGCTTCTGGAATCCTACATAAAGGACTCTAATGAGA 1827 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | | || ||| || || ||||| || || || | ||||||| ||| | |||| Sbjct 1826 AAAGCAGACTCTTCCGAGCAATCGAGACTATTCCGTGTGTTGAGAAGAAAGCGAATTGGG 1767 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | ||||| |||||||| | | || | ||||| | ||| | | | || || | Sbjct 1766 CTCTCAAATGGATCGA-TGGCTCG--GAGACGTTTGCAGAGCGTATTATCGCTTTCGCTT 1710 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||| || || || ||||| || || |||| | | || || ||| | ||| | | Sbjct 1709 GCGTTGAAGGGATTTTCTTTTCCGGAAGCTTCTGCGCGATTTTTTGGTTGAAGAAACGTG 1650 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 || |||||| ||| | ||||||||||||||| | ||| Sbjct 1649 GGTTGATGCCTGGATTAACCTTCTCGAACGAATTAATC 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 933997387293600