Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq102355 95.1 1e-14 seq90319 82.4 6e-11 >seq102355 Length=2708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || | ||| ||||||||| ||||| ||||| ||||| |||| Sbjct 1530 AGACGAAGAACAAGGTGCAAAGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTTCGC 1471 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| ||||| || |||| ||||| |||||| || | | ||| Sbjct 1470 CCATCTTCCAATTGCTTCCCGGCGAAGATCAATCGCTGTTGATCCGGTGGAATCCCCTCC 1411 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA-TTCGACCGT 34088 || ||| ||||| ||| | | | | | |||||| || || || || | || Sbjct 1410 TTATCCTGGATTTTAGCCTTCACGTTATCGATAGTATCAG-AGCTTTCCACCTCCAGAGT 1352 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| ||||| || |||| || ||||||||||| ||||| Sbjct 1351 TATAGTTTTACCCGTTAAAGTCTTCACAAAGATCTGCAT 1313 >seq90319 Length=2932 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || ||| || |||||||| ||||||||| ||||||||||| ||| Sbjct 943 CCTCCCCTCAGCCTCAACACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCC 1002 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || |||| || | ||| || ||||| || |||| | |||||| || Sbjct 1003 AAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTC 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392822730240220