Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq159469 134 1e-26 seq30067 127 2e-24 >seq159469 Length=1977 Score = 134 bits (148), Expect = 1e-26 Identities = 297/440 (68%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 135799 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTG 135858 |||||||| || | |||| |||| ||| || | | || ||||| | || |||| Sbjct 1289 TTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTA 1348 Query 135859 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCC 135918 || ||||| || | | |||||||| || |||||||| ||||| ||| | | ||| || Sbjct 1349 TTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 1408 Query 135919 GCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAG 135978 || || || | | ||||||||||| || || || |||||| | ||||| ||||| | Sbjct 1409 GCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAA 1468 Query 135979 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 136038 || || ||| ||||||||| ||||||| | | || | |||| ||||||| Sbjct 1469 AAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGA 1528 Query 136039 ATCATGCCAGCGTTGATACCGATACCAGCACGCT-TGCTAATATACTTGATGATTGCATT 136097 || || || || |||||||| |||||||| | || | | ||| || | || | | Sbjct 1529 ATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGAT-ACATATTTAACAATAGAGCT 1587 Query 136098 TGCTGTTTCGTTGAT-GCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAA 136156 | || | || || | | ||| | ||| ||| ||| || | ||||| ||||||| Sbjct 1588 AGTAGTAGCATTAATAGAGTTTAAATTA-TCAGCACATTCGATTAAAACACAAGAACTAA 1646 Query 136157 ATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTTGCTTAT 136216 | || || || || || || || || | |||||| || || || | || |||| | Sbjct 1647 ACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAG 1706 Query 136217 TCGCAACAGCATTATAAAAA 136236 | | || |||||||||||| Sbjct 1707 TAGAAATTGCATTATAAAAA 1726 >seq30067 Length=5021 Score = 127 bits (140), Expect = 2e-24 Identities = 291/438 (66%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 135799 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTG 135858 |||||||| || | | ||||| | ||| || | | || ||||| | ||| | ||| Sbjct 3720 TTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTG 3661 Query 135859 TTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCC 135918 || ||||| || | | | |||||| || |||||||| ||||| ||| | | ||| || Sbjct 3660 TTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 3601 Query 135919 GCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAG 135978 || || || | || ||| ||||| || || || || || || | ||||||||||| | Sbjct 3600 GCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAA 3541 Query 135979 AATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGA 136038 || || ||| ||||||||| |||| || | | || | |||| |||||| Sbjct 3540 AAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGA 3481 Query 136039 ATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGATTGCATTT 136098 || || || || ||||| || |||||||| | | || ||| || | || | | Sbjct 3480 ATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTA 3421 Query 136099 GCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGAACTAAAT 136158 | ||| | || ||| | || ||| ||| |||||| | ||||| ||||||||| Sbjct 3420 GTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAAT 3361 Query 136159 TGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTTGCTTATTC 136218 || || || || || | || || | |||||| || || || | || |||| | | Sbjct 3360 TGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTA 3301 Query 136219 GCAACAGCATTATAAAAA 136236 | || |||||| |||||| Sbjct 3300 GAAATAGCATTGTAAAAA 3283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519780658188000