Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq48246 123 5e-23 seq29544 89.7 1e-12 >seq48246 Length=4099 Score = 123 bits (136), Expect = 5e-23 Identities = 351/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Minus Query 243217 GCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAA 243276 || ||||| | |||||| ||| | || || || || ||||||| || ||| | || Sbjct 1809 GCAATCGAGACTATTCCGTGTGTTGAGAAGAAAGCGAATTGGGCTCTCAAATGGATCGAT 1750 Query 243277 --CCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGT 243334 | ||| | | ||||| |||||| | |||| | | ||||||||||| ||| | | Sbjct 1749 GGCTCGGAGA--CGTTTGCAGAGCGTATTATCGCTTTCGCTTGCGTTGAAGGGATTTTCT 1692 Query 243335 TTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCC 243391 ||||||| || |||||||| || |||||| || || ||| ||| |||||||||| Sbjct 1691 TTTCCGGAAGCTTCTGCGCGATTTTTTGGTTG---AAGAAACGTGGGTTGATGCCTGGAT 1635 Query 243392 TCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG---GTG 243448 | | || ||||| || ||| || || ||||| | ||| | || | || Sbjct 1634 TAACCTTCTCGAACGAATTAATCTCGCGAGATGAGGGATTACACTGTGATTTTGCGTGTT 1575 Query 243449 AGCTT-ATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCAT 243506 |||| ||| || || ||| ||||| | | |||| ||||| |||| | Sbjct 1574 TGCTTTATGGGTTA----CTGAAGACGAAGCTGAG-TGAGGAACGAGTCAAGGGAATCGT 1520 Query 243507 CACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTAT 243566 | | || || || || | |||| || ||| | ||||| || | || || ||| | Sbjct 1519 CTCCGATGCGGTGGAGATTGAAAGAGAGTTCGTCTGCGATGCCTTACCTTGTGCTCTTGT 1460 Query 243567 TGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCAT 243626 || |||||| || || ||| | | |||||||||||||| || || | | || Sbjct 1459 AGGGATGAACGGGGATCTGATGAGTGAATACATCGAATTCGTTGCTGATAGGTTATTGGG 1400 Query 243627 CGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCAT 243686 || | || |||| |||| ||||||| || ||||||| |||| | ||||| || || Sbjct 1399 TGCATTGGGATATGGGAAATTGTACAATGCCCAGAACCCGTTTGATTGGATGGAACTGAT 1340 Query 243687 TTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||| | || ||||| || || |||||||| || | || |||| ||||| Sbjct 1339 TTCGTTACAGGGGAAGACCAATTTCTTCGAGAAAAGGGTTGGTGAGTATCA 1289 >seq29544 Length=5055 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 68690 AAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGA 68749 |||||||||||| | ||| ||| ||||| |||||||||||||||||||| || || || Sbjct 2351 AAGAGATTGGGGTTTTGCAGGGGACTACGTGGAAGCAATGTGGTTGATGCTACAGCAGGA 2410 Query 68750 TACTCCGGATGACTATGTGATTGCAAC 68776 || || |||||||||||| | ||||| Sbjct 2411 TAAGCCAGATGACTATGTGGTGGCAAC 2437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1090499996228500