Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010105.1 Length=170523 Score E Sequences producing significant alignments: (Bits) Value seq159469 170 2e-37 seq30067 170 2e-37 >seq159469 Length=1977 Score = 170 bits (188), Expect = 2e-37 Identities = 297/432 (69%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 141947 CGTAGTCCATATGACGAATACGGTTCTCATCGACACCTTTGTTGTTTTTCAAAACGAGCA 142006 |||| || |||||||| | | || || || | ||| | || ||||| ||||| | | Sbjct 1305 CGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 1364 Query 142007 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 142066 | |||||||||| |||||||| || |||||| || ||| ||||| || || | | || Sbjct 1365 AACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTC 1424 Query 142067 CACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGG 142126 | ||||||||||| ||||| || ||| | || || ||||| | || || ||| ||| | Sbjct 1425 CGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAG 1484 Query 142127 TATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGA 142186 |||| ||||||| | | |||| || ||| || ||||| || | || | Sbjct 1485 TATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAA 1544 Query 142187 TACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTGGCAGTTTTGTTAATAG 142246 |||| || || ||||||| || | |||| || || ||| | | ||| ||||||| Sbjct 1545 TACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAG 1604 Query 142247 ATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGAGTTGGAGTAC 142306 | || | || | ||| || | |||||||||||||| |||||||| ||||| | Sbjct 1605 AGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTC 1664 Query 142307 GTGCACCAGCCATAATAGGAGTAGGCAACGAAACCTGACGAGTACTTACAGCGTCATAAA 142366 || | |||| |||||| || || || || |||| | | |||| | || | ||||| Sbjct 1665 GTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAA 1724 Query 142367 AACGAATAATAT 142378 |||| |||||| Sbjct 1725 AACGCTTAATAT 1736 >seq30067 Length=5021 Score = 170 bits (188), Expect = 2e-37 Identities = 301/439 (69%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 141940 TGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACCTTTGTTGTTTTTCAAA 141999 || ||| | ||||| | |||||| | | || || || | || |||||||||| ||| Sbjct 3711 TGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAA 3652 Query 142000 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 142059 || | | |||||||||||| |||||||| || |||||| || ||| ||||| || || Sbjct 3651 ACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCT 3592 Query 142060 CGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 142119 | | || ||||| ||||| ||||| ||||| | || |||||||| | || || ||| Sbjct 3591 CTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATA 3532 Query 142120 ACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCA 142179 ||| ||||| |||| || | | |||| || ||| || ||||| || Sbjct 3531 CAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCT 3472 Query 142180 ACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTGGCAGTTTTG 142239 | || |||||||| || ||||||| |||| |||| || || ||| | | || Sbjct 3471 GCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCA 3412 Query 142240 TTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGAGTT 142299 ||||| || || | || | |||||| | ||||||||||||||||||||||| Sbjct 3411 TTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGTA 3352 Query 142300 GGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAACCTGACGAGTACTTACAGCG 142359 ||||| | | |||| |||||| || || || || |||| | | |||| | ||| Sbjct 3351 GGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGCA 3292 Query 142360 TCATAAAAACGAATAATAT 142378 | ||||||||| ||||| Sbjct 3291 TTGTAAAAACGATGAATAT 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539571125554800