Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq118173 347 4e-91 seq200536 239 2e-58 seq493767 197 5e-46 >seq118173 Length=2464 Score = 347 bits (384), Expect = 4e-91 Identities = 743/1104 (67%), Gaps = 26/1104 (2%) Strand=Plus/Minus Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916 ||| |||| || | |||||| ||| || ||||| ||| | ||| || ||||| ||| Sbjct 2421 ATGTCTTATACGATTTTTTCAAAAAAAAAAAATAATCAACTTAAAGAACCTATGTTTTTT 2362 Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTA 51976 || || || || ||||| | ||||| ||||| || || || || || | ||| Sbjct 2361 GGGCAACCTGTAAATATTGCTAGGTATGATCAACAAAAATATAATATTTTTGAACAATTA 2302 Query 51977 ATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGT 52036 ||||| |||||||| ||||| || ||| |||| ||||| |||| | || | || | Sbjct 2301 ATTGAAAAACAATTATCATTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGTGATAGA 2242 Query 52037 ATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTAT 52096 || |||| ||| || ||||| || ||| |||| ||||| | |||||| | ||| Sbjct 2241 ATAGATTTTCAAAACTTACCTAATAATGAAAAACATATTTTTATTAGTAATTTAAAATAT 2182 Query 52097 CAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTG 52156 || | | ||||| || ||||| ||| | | || || | || ||| | |||||| | Sbjct 2181 CAAACATTACTTGATTCTATTCAAGGAAGAAGCCCTAATATAGCTTTTTTACCAATCATT 2122 Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216 ||||||||| | ||||| ||| ||||||| |||||||| || || ||||| ||||| Sbjct 2121 TCTATTCCTGAACTAGAGACATGGGTTGAAACATGGTCTTTTTCAGAAACTATACATTCT 2062 Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTA-TCTTTGATGA 52275 ||||||||||| || || ||| | || ||||| | | | | | | || | |||||||| Sbjct 2061 CGTTCTTATACTCATATAATTAGAAACATTGTCA-ACTCTCCATCTGTAGTATTTGATGA 2003 Query 52276 AATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGA 52335 || | | || |||| || || | || || | || || |||||||| || Sbjct 2002 TATTATTTCAAATAAACATATTAATGATCGTGCTAAAAATATTTCTATCTATTATGATGA 1943 Query 52336 ACTCCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGTCATGA 52395 ||| | | ||| | ||||| || || ||||| || | ||| | |||| Sbjct 1942 ACTGATAACATTGACTAGTTATTGGCATTTATTAGGAGAGGGCATTCATTTAGTAAATGA 1883 Query 52396 A------------ATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTC 52443 | |||| | ||| | | | || || | | ||| |||| | || Sbjct 1882 AAAAAAAATTAATATTAATTTGCATTTGCTAAAAAAAAGATTATATCTATGTTTAATAAG 1823 Query 52444 TATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGC 52503 | | |||| || ||||||||| | || ||||| || ||||| || |||||||| || || Sbjct 1822 TGTAAATGTTTTAGAAGCAATTAGGTTTTATGTTAGTTTTGCATGTTCATTTGCATTTGC 1763 Query 52504 AGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGC 52563 |||| | | |||||||||||||||| || ||||| | ||||| ||||| |||||||| Sbjct 1762 AGAAAGAGAACTAATGGAAGGAAATGCAAAAATTATAAGATTAATAGCACGTGATGAAGC 1703 Query 52564 ACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGT---GGAAAAGATGA 52620 | | ||| | ||||||||||| || || | |||||| | |||| |||| |||| Sbjct 1702 ATTACATCTAACAGGAACTCAACATATTTTAAACCTTTT---AAGTAACATAAAAAATGA 1646 Query 52621 CCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAAT-TGTTCGAAG 52679 | |||| || || | | ||||| ||||| || | ||| | ||| Sbjct 1645 TGAGCATATGGAAGATATAGTTTTAGAATGTAAAGAAGAA-GCTATTAATATATTCATTT 1587 Query 52680 ATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTG 52739 ||| | |||||||| || | ||||| || ||||| ||| || | ||||| ||| | | Sbjct 1586 CTGCCTCGCAACAAGAAAAAAAATGGGCTGAATATTTATTCCAAAACGGCTCGATGCTAG 1527 Query 52740 GCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAG 52799 | ||||| || | ||||| || ||| | ||||||||||| |||||||| ||||| | Sbjct 1526 GATTAAATAAAGATATTCTTTGGCAGTATATAGAATATATCACAAATATTCGCATGCACG 1467 Query 52800 CAGTTGGATT--AGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGC 52857 || | || || | ||| || || ||| | |||| || ||||| |||||||||| Sbjct 1466 CAATAGGTTTTAAAATG--CCTTTTAAAAAAAAATCTAATCCTATTCCTTGGATTAATGA 1409 Query 52858 ATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCT 52917 ||||| | ||| ||| | |||| |||||| || ||||| || || ||||| || | Sbjct 1408 TTGGTTAACTTCTGATAATATACAAACTGCTCCTCAAGAAACAGAAATAAGTTCTTATTT 1349 Query 52918 GGTCGGGCAAATTGACTCCGAAGT 52941 || || || ||||| || || || Sbjct 1348 AGTTGGTCAGATTGATTCAGAGGT 1325 >seq200536 Length=1633 Score = 239 bits (264), Expect = 2e-58 Identities = 371/520 (71%), Gaps = 10/520 (2%) Strand=Plus/Minus Query 52427 TATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCT 52486 |||||||| || || | |||| || ||||||||| | || ||||| || |||||| Sbjct 1622 TATTTATGTCTAATAAGCGTTAATGTTTTAGAAGCAATTAGATTTTATGTAAGTTTTGCT 1563 Query 52487 TGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTA 52546 || |||||||| || |||||| | | ||||||||||| ||||| || |||||| | ||| Sbjct 1562 TGTTCATTTGCATTTGCAGAAAGAGAATTAATGGAAGGCAATGCAAAAATTATTAGATTA 1503 Query 52547 ATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTT-GC 52605 || ||||| |||||||| | ||||| ||||||||||| || || | || ||| | || Sbjct 1502 ATAGCACGCGATGAAGCTTTACATTTAACAGGAACTCAACATATTTTAAATCTTTTAAGC 1443 Query 52606 AAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCA 52665 || || ||| || | | | |||| || || | |||||| | ||| || | Sbjct 1442 AA-TGTTAAAAATAATGAAAACATGGCAGATATCATTATAGAATGCAAAAATGAA-GCTA 1385 Query 52666 GAAAT-TGTTCGAAGAT-GCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAA 52723 ||| | ||| | | | ||||| ||||||| || | ||||| || ||||| || || Sbjct 1384 TCAATATATTC-ATGTTAGCTGCGGAACAAGAAAAAAAATGGGCTGAATATTTATTTCAA 1326 Query 52724 GATGGCTCTATGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACG 52783 |||| || ||| | || ||||| || | ||| | || || | |||||||| || Sbjct 1325 AATGGTTCAATGTTAGGATTAAATAAAGATATTATTTGTCAGTACATAGAATATATAACT 1266 Query 52784 AATATTCGTATGCAAGCAGTTGGATT--AGATGCTCCATTCAAAGGTGCAACTAACCCGA 52841 |||||||||||||| ||| | || || | |||| |||| ||| | ||||||| | Sbjct 1265 AATATTCGTATGCATGCAATAGGTTTTAAAATGC--CATTTAAAAAACAATCTAACCCTA 1208 Query 52842 TTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGG 52901 |||| |||||||||| ||||| | ||| ||| | |||| |||||| || ||||| | Sbjct 1207 TTCCTTGGATTAATGACTGGTTAACTTCCGATTATATACAAACTGCTCCTCAAGAAACAG 1148 Query 52902 AGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAGT 52941 | |||||||| || | || ||||||||||| || ||||| Sbjct 1147 AAATTAGTTCTTATTTAGTTGGGCAAATTGATTCGGAAGT 1108 >seq493767 Length=615 Score = 197 bits (218), Expect = 5e-46 Identities = 280/394 (71%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916 ||| |||| || | ||||| ||| || || || ||| | ||| || ||||| ||| Sbjct 25 ATGTCTTATACGATATTTTCTAAAAAAAAAAACAATCAACTTAAAGAACCTATGTTTTTT 84 Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTA 51976 || || || || ||||||||||||| || || || || ||||| || | || Sbjct 85 GGACAACCTGTAAATATTGCTCGATATGATCAGCAAAAATATAATATATTTGAACAACTA 144 Query 51977 ATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGT 52036 ||||| |||||||| ||||| || ||| |||| || || |||| |||| || || Sbjct 145 ATTGAAAAACAATTATCATTTTTTTGGAGACCTGAGGAAATAGATCTTTCTAGAGATCGA 204 Query 52037 ATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTAT 52096 || |||| ||| || ||||| | | ||| |||||||||| | |||||| | ||| Sbjct 205 ATAGATTTTCAAAATCTACCGGATCATGAAAAACACATTTTTATTAGTAATTTAAAATAT 264 Query 52097 CAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTG 52156 || | | ||||| |||||||| ||| | | || || | || ||| | || || | Sbjct 265 CAAACATTACTTGATTCAATTCAAGGAAGAAGTCCTAATATAGCTTTTTTACCTATTATT 324 Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216 ||||| ||| |||| || ||||||||||| |||||||| || || |||||||||||| Sbjct 325 TCTATTCCAGAACTGGAAACATGGATTGAAACATGGTCTTTTTCAGAAACTATTCATTCA 384 Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTA 52250 ||||||||||| || || || | |||||||||| Sbjct 385 CGTTCTTATACTCATATAATAAGAAATATTGTTA 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167636011867340