Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq48246 102 1e-16 seq107321 96.9 4e-15 seq6274 96.9 4e-15 seq43994 89.7 6e-13 seq17013 89.7 6e-13 >seq48246 Length=4099 Score = 102 bits (112), Expect = 1e-16 Identities = 180/261 (69%), Gaps = 11/261 (4%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||| || || ||||| | ||| ||||||||| | ||| Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | || || ||||||||||| |||||||| || || || || ||||| || Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG---TCA 126223 || || || || ||||| || | | |||||| ||||| || || | | || Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAA------CGTCTCCGAGCCATCG 1753 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 | ||| || | ||||| | ||| || ||||| | |||||| | |||| ||| ||| Sbjct 1754 ATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGG 1813 Query 126284 AAGAGTTCCTTCTTTTCTGAT 126304 |||||| || ||||||| || Sbjct 1814 AAGAGT--CTGCTTTTCTCAT 1832 >seq107321 Length=2628 Score = 96.9 bits (106), Expect = 4e-15 Identities = 184/265 (69%), Gaps = 11/265 (4%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||||||||| || ||||| | ||| |||||||| || |||||||| || || Sbjct 1280 GTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCC 1221 Query 126118 CCGCTTCTTCAACCAGAAAAT--CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 || || || | |||||| || |||| ||| || || ||||||||||| || || || Sbjct 1220 TCGTTTTTTGAGCCAGAATATGGCGCAGAAACTG--CCGGAGAAGAAGATACCTTCGACG 1163 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATC 126235 || ||||| || | || || || || |||| || | || | ||| | | Sbjct 1162 CAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGA---TCCATCGATCCATCTGAGG 1106 Query 126236 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 126295 ||||| | || || |||| ||| || |||| ||| | ||| || ||| || ||| | Sbjct 1105 GCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAG--CCTAC 1048 Query 126296 TTTTCT-GATGGA-TCTTTGATGTA 126318 | |||| | |||| ||||||||||| Sbjct 1047 TCTTCTCGTTGGAGTCTTTGATGTA 1023 >seq6274 Length=8207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 114877 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 114936 ||| || | ||| || | |||||| || ||||| ||||||| || || || | || || Sbjct 4822 CAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACC 4881 Query 114937 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCAT 114993 ||| | || ||| | |||| ||||| | || ||| ||||||| || || | ||| Sbjct 4882 CTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACAT 4941 Query 114994 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTG 115051 |||||| ||||||| |||| |||||||| || || || | |||| | | |||||| Sbjct 4942 TGGAATAATACCATTAGATGTTCCATTTGTGCCACGTAT--GTAACTTCCAGTTGCTCTG 4999 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGC 115083 | || ||| | | ||||||||||||||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGC 5031 >seq43994 Length=4276 Score = 89.7 bits (98), Expect = 6e-13 Identities = 214/313 (68%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || |||||||||||| || | ||||| | || |||||||||||| || | | Sbjct 1627 AATCCATCCATCTCAACTAATAACTGATTCAACGTGCTTTCGCGTTCATCGTTTCCACCT 1686 Query 10935 GCATACC-ACC-CG--CACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 | | ||| ||| || ||| ||| || | |||| ||||| || ||||||||||| | Sbjct 1687 GAAAACCCACCACGACCAC-GCGC-GCGT-CCGATCGCGTCTATCTCATCGATGAAGATT 1743 Query 10991 ATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 |||| ||| | || | || ||| || | | ||||| || || || || Sbjct 1744 ATACTTGGTGCACATTGTCTTGCTTCTTGGAACAAACTGCGGACCCTTGCGGGTCCCACG 1803 Query 11051 CCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGAT--GAAGGGGACGTTGGATT 11108 || ||||||||||||| || | || |||| ||||| ||| || |||| ||||| Sbjct 1804 CCGACAAACATTTCCATGAAGTCGGAACCGGAGA--TGGATAGGAAAGGTACGTCGGATT 1861 Query 11109 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGG 11168 |||||||| | ||| ||||| ||||| ||||| || |||||| || ||||||| | Sbjct 1862 CACCCGCGGTTGCTTTAGCGAGAAGGGTTTTCCCGGTTCCAGGTGGGCCCACGAGAAGCG 1921 Query 11169 CACCACGTGGGAT 11181 |||| |||||| Sbjct 1922 CACCTTTTGGGAT 1934 >seq17013 Length=6145 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| || ||||| | |||||| || |||||||| | |||||||||| | Sbjct 1413 AAAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACC 1354 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| |||| | ||| | ||||| || || |||||||| ||||| || || || Sbjct 1353 ACCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCA 1294 Query 10996 CGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 ||| | |||| | || |||||| | ||| | ||||| ||||| ||||||| Sbjct 1293 AGGT-GCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACTCTAGATGCACCAACACCCA 1235 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||| | || || || | | || | |||| || || || || | ||| || | Sbjct 1234 CAAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTCCGG 1175 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | | || | || | ||||||||||| || || ||| Sbjct 1174 CCACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGGT 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590811756718800