Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq27206 123 3e-23 seq75854 120 3e-22 seq90807 107 2e-18 seq566467 104 3e-17 seq90319 102 9e-17 seq445472 98.7 1e-15 seq50039 96.9 4e-15 seq102355 95.1 1e-14 seq40887 93.3 5e-14 seq35420 89.7 6e-13 seq649280 87.8 2e-12 seq48514 86.0 7e-12 seq107820 84.2 2e-11 >seq27206 Length=5223 Score = 123 bits (136), Expect = 3e-23 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| || | ||||| ||| |||||||||||||||||||||||| Sbjct 2602 ACCACCTCTAAGACGCAGAACAAGATGCAGAGTGGACTCCTTTTGAATATTGTAATCAGC 2661 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||||| | || || |||||||||||||| ||||| || | ||| || || | || Sbjct 2662 CAAAGTCCGCCCATCTTCAAGCTGCTTACCAGCAAATATAAGCCTCTGTTGATCAGGCGG 2721 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156 | | |||||||||| ||| | |||| |||| | | | ||| || |||| | Sbjct 2722 AATACCCTCCTTGTCC-TGAATCTTTGCCTTGACATTATCAATCGTATCCGAGCTC---T 2777 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 2778 CAACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2829 >seq75854 Length=3247 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | |||||| || | ||||| ||| |||||||||||||||||||||||| Sbjct 2112 ACCACCTCTAAGACGCAAGACAAGGTGCAAAGTGGACTCCTTTTGAATATTGTAATCAGC 2171 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | | || || |||||||| ||||| ||||| || | |||||| || | ||| Sbjct 2172 CAAAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCAGGTGG 2231 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156 | | |||||| ||| ||| | |||| || | | | | ||||| |||| | Sbjct 2232 AATACCCTCCTTATCC-TGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTC---T 2287 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 2288 CAACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2339 >seq90807 Length=2923 Score = 107 bits (118), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || | |||| || |||||||| || ||||| Sbjct 1372 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCAAGCTGCTTTCCGGCGAA 1313 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||| ||||| | ||| | || ||||||||| ||| || || | | Sbjct 1312 GATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATT 1253 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||||| ||||| || || | ||||| || || |||||||| || || || Sbjct 1252 GTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTACCCGTTAGGGTTTTCAC 1193 Query 42197 AAAGATTTGCATTTTCACGCCGA 42219 ||||| ||||||| |||||| Sbjct 1192 GAAGATCTGCATTT---CGCCGA 1173 >seq566467 Length=515 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 203 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 262 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 263 CTTACCACTATACTACCGAGGA 284 >seq90319 Length=2932 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | || | ||| | ||| |||||| || || |||||||| || Sbjct 1626 ACCTCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 1685 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||||| |||| || || ||||| || ||||| || |||| |||||||| | || Sbjct 1686 CAAAGTCCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGG 1745 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATT 42156 | | |||||||| |||||| |||| ||| | | | |||||| ||| | Sbjct 1746 AATCCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGTTGTCTATGGTGTCGGAGCTC---T 1801 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| |||||||| || || || || ||||| || ||||||||||| Sbjct 1802 CGACCTCGAGAGTGATGGTCTTACCAGTAAGGGTCTTAACGAAGATTTGCAT 1853 >seq445472 Length=701 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||||| Sbjct 438 AATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG-GATACTCA 380 Query 57061 CCACTATACTACCGAGGAT 57079 ||||||||||||||||||| Sbjct 379 CCACTATACTACCGAGGAT 361 >seq50039 Length=4031 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || || || | ||||| || ||||| || || ||||| Sbjct 1024 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCGGCGAAG 1083 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||| | || ||||| || | ||| | || |||||||| |||||| ||||| | Sbjct 1084 ATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTGACATTG 1143 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||||| || || | ||||||||||| || ||||| || ||||| Sbjct 1144 TCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTTTTTACG 1203 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 1204 AAAATCTGCAT 1214 >seq102355 Length=2708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || || || || || |||| || ||||| ||||| ||||| Sbjct 1048 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAA 989 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || ||||| |||| || | | |||||||| ||| | ||||| | ||| Sbjct 988 GATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCT-TGAATCTTTGTCTTCACGT 930 Query 42137 CGCC-ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| || | |||||| || || || || || || | Sbjct 929 TGTCGATTGTGTCCGAGCTC---TCCACCTCCAACGTGATCGTCTTTCCGGTCAGGGTTT 873 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 872 TGACGAAGATTTGCAT 857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| ||||||||||| || ||||| || |||| || ||||| ||||| ||||| Sbjct 819 TCTTTTTGGATATTGTAATCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAG 760 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || || || || | || | | ||||||||| || | || |||| | | | Sbjct 759 ATAAGACGTTGTTGATCCGGAGGAATTCCTTCCTTGTCC-TGTATCTTCGTTTTAACATT 701 Query 42138 G-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||| ||| ||| || || |||| || || || || |||||||| || || Sbjct 700 GTCGATCGTATCGGAACTC---TCGACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTT 644 Query 42194 TACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 643 CACAAAAATCTGCAT 629 >seq40887 Length=4418 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || |||||||| |||| || || |||| ||||||||||| || ||||| Sbjct 2035 TCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAG 1976 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | || ||||| | || | | ||||||||| ||||||| |||| ||| Sbjct 1975 ATAAGCCTTTGTTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATTTTTGCCTTGA-CGTT 1917 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | || || |||| || || |||| ||||| || || || || || ||||| Sbjct 1916 GTCAATGGTATCTGAGCTC---TCGACTTCGAGAGTGATCGTCTTTCCGGTGAGAGTCTT 1860 Query 42194 TACAAAGATTTGCAT 42208 ||| ||||| ||||| Sbjct 1859 TACGAAGATCTGCAT 1845 >seq35420 Length=4697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 1413 CTCTTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 1354 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||||| |||||| ||| | ||| Sbjct 1353 GATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGT 1295 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || | |||||||| || || || || ||||| | Sbjct 1294 TGTCGATGGTGTCGGAGCTTTCGACCTCTAGGGTGATGGTCTTACCGGTGAGGGTCTTAA 1235 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 1234 CGAAGATTTGCAT 1222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| ||||| | |||||||| | || ||||| ||||| ||||||||||| Sbjct 2133 ACCACCTCTCAAACGAAGAACCAAATGGAGAGTTGATTCCTTCTGAATGTTGTAATCAGC 2074 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || || ||||| || ||||| || | | ||| ||||| | ||| Sbjct 2073 AAGAGTACGGCCGTCCTCCAGTTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCAGGTGG 2014 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | |||||| || ||| || || | ||| | | | ||||| |||| | Sbjct 2013 TATTCCCTCCTTATCTTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCGGAGCTC---T 1958 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 1957 CAACCTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 1906 >seq649280 Length=433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 60 Query 57067 TACTACCGAGG 57077 |||||||| || Sbjct 61 TACTACCGCGG 71 >seq48514 Length=4088 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | || | ||||| || ||||||||||| ||||||||||| Sbjct 2713 ACCACCTCTAAGACGAAGGACAAGGTGCAAAGTTGATTCCTTTTGAATGTTGTAATCAGC 2772 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| | ||| || || |||||||| ||||| ||||| || | ||| || || | || Sbjct 2773 CAAAGTTCTCTCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGTTGATCAGGCGG 2832 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG 42127 | | |||||| ||| ||| | |||| Sbjct 2833 AATCCCCTCCTTATCC-TGAATCTTTG 2858 >seq107820 Length=2620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || | |||| || || || || || ||||| Sbjct 2059 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCTGCCGTCCTCAAGTTGTTTCCCGGCGAA 2118 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | || |||||||| ||| || || | | Sbjct 2119 AATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATT 2178 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | ||| || || || || ||||| || || || Sbjct 2179 GTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATCGTCTTCCCAGTTAGGGTTTTCAC 2238 Query 42197 AAAGATTTGCATTTTCACGCCGAAT 42221 ||||| |||||||| ||||||| Sbjct 2239 GAAGATCTGCATTTT--TGCCGAAT 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537263872922400