Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq227744 113 1e-20 seq342690 87.8 5e-13 >seq227744 Length=1455 Score = 113 bits (124), Expect = 1e-20 Identities = 229/338 (68%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 27570 CATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTGCCCTGT 27629 ||||||||| |||| ||| ||| |||| || || ||||| || || | || | Sbjct 443 CATTTGCATTGTACCACCAATATTTACAATAATTTCTGTAGTGTAACGTTCAAGTCCATT 384 Query 27630 CTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCACCTTTTTT 27689 || |||||||| ||||| ||| | | ||| || | ||| || ||| ||||||| Sbjct 383 TTGATCTTGCCATTTTCTAGTTTGTAACGATCCTTCAATATATACTTGAGAACCTTTTCG 324 Query 27690 CACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCCATTCAGT 27749 | ||| | || | | ||| || | ||| |||| || | | ||||||||||| || Sbjct 323 AAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCGATGCCATTCTGT 264 Query 27750 CTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGCGACTGTCAG 27809 | || || | ||| ||||| | ||||||| ||| | ||||| ||||| | ||||| Sbjct 263 TTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGTAGCTAATGTCAT 204 Query 27810 GTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCCGACCCGGCC 27869 || | | || | || ||| ||||||||| || || |||||||| | | || Sbjct 203 ATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGCCCTAAATGCCC 144 Query 27870 --TAAGATGATCACCTTATTTACGCCTCTACTAGCCAT 27905 ||||| || || |||||||| |||||||| ||||| Sbjct 143 AATAAGA--ATAACTTTATTTACACCTCTACTGGCCAT 108 >seq342690 Length=956 Score = 87.8 bits (96), Expect = 5e-13 Identities = 226/341 (66%), Gaps = 10/341 (3%) Strand=Plus/Plus Query 27570 CATTTGCAT---CACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTGCCC 27626 ||||||||| | ||||| || || ||||| || || || || || || ||| || Sbjct 591 CATTTGCATAGTCCCACCAATATTTACAACA---ATTTCTGTAGTATAACGTTCTAAACC 647 Query 27627 TGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCACCTTT 27686 | ||||||||||| ||||| ||| || ||| || | ||| || ||| |||||| Sbjct 648 ATTTTGGTCTTGCCATTTTCTAGTTTGTAGTGATCCTTCAATATATACTTGAGAACCTTT 707 Query 27687 TTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCCATTC 27746 | | ||| | || | | ||| || | ||| |||| || | | | ||||||||| Sbjct 708 TCGAAGATATTCACCGGCAATTTCTGCTAATTTTCCAAATAATACTATTCTATGCCATTC 767 Query 27747 AGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGCGACTGT 27806 || | || || | ||| ||||| | ||||||| ||| | ||||| || || | || Sbjct 768 TGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAAAGT 827 Query 27807 CAGGTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCCGACCCG 27866 || || | | || | || || |||||| || || || ||||| || | | Sbjct 828 CATATTTACTACTGCATTACCATTGGGCATATAACGTACTTCTGGATCTTGTCCTAAATG 887 Query 27867 GCC--TAAGATGATCACCTTATTTACGCCTCTACTAGCCAT 27905 || ||||| || || ||||| ||||||||||| ||||| Sbjct 888 TCCAATAAGA--ATAACTTTATTAACGCCTCTACTTGCCAT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136098768687960