Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq159469 228 9e-55 seq30067 206 3e-48 >seq159469 Length=1977 Score = 228 bits (252), Expect = 9e-55 Identities = 311/433 (72%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 138402 TAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGA 138461 ||||| |||||||| | | |||||||| | ||| | |||||||| ||||| | | | Sbjct 1307 TAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 1366 Query 138462 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAATTCCA 138521 |||||||||| |||||||| || |||||| || ||| ||||| || || | | ||| Sbjct 1367 CTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCG 1426 Query 138522 CCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTA 138581 || |||||||| ||||| || ||| | ||||| ||||| ||||||| ||| ||||||| Sbjct 1427 CCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTA 1486 Query 138582 TGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATA 138641 || | ||||||| | | ||| | ||| || ||||| || | |||||| Sbjct 1487 TGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATA 1546 Query 138642 CCAATTCCAGCACGTTTAGAGATATATTCAACAATTGA---AGCGGAAGCCTTATTGATA 138698 || ||||||||||||| || | ||||| |||||| || || | ||| ||| ||| Sbjct 1547 CCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGC---ATTAATA 1603 Query 138699 GACTTCAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGCCGAGTTGGAGTA 138758 || || || |||| | || || | |||||| ||||||||||| ||||| ||||| Sbjct 1604 GAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTT 1663 Query 138759 CGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGCTTCATAA 138818 || |||| |||||| || ||||| |||||||| | |||||| | ||| | |||| Sbjct 1664 CGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAA 1723 Query 138819 AAACGGATAACAT 138831 ||||| ||| || Sbjct 1724 AAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 206 bits (228), Expect = 3e-48 Identities = 314/447 (70%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 138377 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138436 ||| || | ||| | |||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 138437 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138496 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 138497 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138556 ||| ||||| || || | || || || || ||||| ||||| ||||| | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 138557 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138616 ||| ||||||| ||| ||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 138617 GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTAGAGATATATTCAACAAT 138676 || ||||| || | |||||||||||||||||||||| || | ||||| |||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 138677 TGAAGCGGAAGCCTTATTGATAGACTTCAATGAATCACCTGCCTCAATAACAACACATGA 138736 || | | | ||| || || || || |||| | ||||| | |||||| || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 138737 ACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 138796 |||||| || ||||| ||||| | | |||| |||||| || ||||| |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTT 3308 Query 138797 TCGAGTAGATACTGCTTCATAAAAACG 138823 |||||| | || | |||||||| Sbjct 3307 AAAAGTAGAAATAGCATTGTAAAAACG 3281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523448841728400