Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq159469 188 8e-43 seq30067 187 3e-42 >seq159469 Length=1977 Score = 188 bits (208), Expect = 8e-43 Identities = 303/433 (70%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 143015 CGTAGTCCATATGACGAATACGGTTTTCATCGACACCTTTGTTGTTTTTCAGAACGAGCA 143074 |||| || |||||||| | | ||||| || | ||| | || ||||| | ||| | | Sbjct 1305 CGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 1364 Query 143075 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 143134 | |||||||||| |||||||| || |||||| || ||| ||||| || || | | || Sbjct 1365 AACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTC 1424 Query 143135 CACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCAG 143194 | ||||||||||| ||||| || ||| | || || ||||| | || || ||| ||||| Sbjct 1425 CGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAG 1484 Query 143195 TATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTAA 143254 |||| ||||||| | | |||| || ||| || ||||| || | |||| Sbjct 1485 TATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAA 1544 Query 143255 TACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTTGCAGTTTTGTTAATAG 143314 |||| || || ||||||| || | |||| || || ||| | | ||| ||||||| Sbjct 1545 TACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAG 1604 Query 143315 A-TTTCAGTGAGTCACCTGCTTCAATAACAACACAAGAACTAAATTGACGGGTTGGAGTA 143373 | ||| | | | ||| | ||| || | ||||||||||||||| ||||| || ||||| Sbjct 1605 AGTTTAAATTA-TCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTT 1663 Query 143374 CGTGCACCAGCCATAATAGGAGTAGGCAACGAAACCTGACGAGTACTTACAGCGTCATAA 143433 ||| | |||| |||||| || || || || |||| | | |||| | || | |||| Sbjct 1664 CGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAA 1723 Query 143434 AAACGAATAATAT 143446 ||||| |||||| Sbjct 1724 AAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 187 bits (206), Expect = 3e-42 Identities = 307/440 (70%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 143008 TGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACCTTTGTTGTTTTTCAGA 143067 || ||| | ||||| | |||||| | | ||||| || | || |||||||||| | | Sbjct 3711 TGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAA 3652 Query 143068 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 143127 || | | |||||||||||| |||||||| || |||||| || ||| ||||| || || Sbjct 3651 ACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCT 3592 Query 143128 CGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 143187 | | || ||||| ||||| ||||| ||||| | || |||||||| | || || ||| Sbjct 3591 CTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATA 3532 Query 143188 ACACCAGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCA 143247 ||||||||| |||| || | | |||| || ||| || ||||| || Sbjct 3531 CAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCT 3472 Query 143248 ACGTTAATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTTGCAGTTTTG 143307 | ||||||||||| || ||||||| |||| |||| || || ||| | | || Sbjct 3471 GCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCA 3412 Query 143308 TTAATAG-ATTTCAGTGAGTCACCTGCTTCAATAACAACACAAGAACTAAATTGACGGGT 143366 ||||| | |||| | | | ||| | |||||| | ||||||||||||||||||||| || Sbjct 3411 TTAATGGAATTTAAATTA-TCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGT 3353 Query 143367 TGGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAACCTGACGAGTACTTACAGC 143426 ||||| | | |||| |||||| || || || || |||| | | |||| | ||| Sbjct 3352 AGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGC 3293 Query 143427 GTCATAAAAACGAATAATAT 143446 | ||||||||| ||||| Sbjct 3292 ATTGTAAAAACGATGAATAT 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542508204351600