Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq107321 98.7 1e-15 seq17013 98.7 1e-15 seq48246 95.1 1e-14 seq1209 91.5 2e-13 seq6274 82.4 9e-11 >seq107321 Length=2628 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/263 (69%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||||||||| || ||||| | ||| |||||||| || |||||||| || || Sbjct 1280 GTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCC 1221 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || || | |||||| || || || || ||| ||||||||||| || || || || Sbjct 1220 TCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCA 1161 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | || || || |||| || | ||| | ||| | | || Sbjct 1160 AGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGA---TCCATCGATCCATCTGAGGGC 1104 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| | || || |||| ||| || |||| ||| | ||| || ||| || ||| || Sbjct 1103 CCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAG--CCTACTC 1046 Query 127771 TTCT-GATGGA-TCTTTGATGTA 127791 |||| | |||| ||||||||||| Sbjct 1045 TTCTCGTTGGAGTCTTTGATGTA 1023 >seq17013 Length=6145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 198/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| || ||||| | |||||| || |||||||| | |||||||||| | Sbjct 1412 AAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACCA 1353 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| |||| | ||| | ||||| || || ||||| |||||||| || || || Sbjct 1352 CCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCAA 1293 Query 12912 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 ||| | |||| | || |||||| | ||| | ||||| ||||| |||||||| Sbjct 1292 GGT-GCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACTCTAGATGCACCAACACCCAC 1234 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||| | ||| || || | | || | |||| || || || || | ||| || || Sbjct 1233 AAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTCCGGC 1174 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081 | || | || | ||||||||||| || |||||| ||| |||| || Sbjct 1173 CACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGGTGGTCCCACGAGGAG 1123 >seq48246 Length=4099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/260 (68%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||| || || ||||| | ||| ||||||||| | || Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || || ||||||||||| |||||||| || || || || ||||| ||| Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG--AGCGGGACTTTGTATCAA 127697 || || || || ||||| || | | |||||| ||||| | || | | ||| | Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTCCGAGCC-----ATCGA 1754 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| || | ||||| | || || ||||| | ||| || | |||| ||| ||| | Sbjct 1755 TCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGA 1814 Query 127758 AGAGTTCCTTCTTTTCTGAT 127777 ||||| || ||||||| || Sbjct 1815 AGAGT--CTGCTTTTCTCAT 1832 >seq1209 Length=11671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 233/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| |||||| || || || || || | |||| || ||||| | || || Sbjct 2617 TCAAGAATATCAGCACGATTAGTAGCTGCAACAACAATAATACCCGTATTCCCTTCAAAT 2558 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| |||||||| || ||||| | || ||||| | |||||||||| | | | Sbjct 2557 CCATCCATTTCAGTCAAAAGCTGATTCAATGTCTGTTCCCTTTCATCATTCCCA--CCTC 2500 Query 12855 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACG 12912 | | || | | | ||| | || || || ||||| || |||| || || ||||||| Sbjct 2499 CAATTCCAGTTCCTCTTTGTCTCCCAACTGCATCAATCTCATCAACAAACACAATACACG 2440 Query 12913 GTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 12972 | ||| || || || ||| | ||| | ||||||| || || ||||| |||| Sbjct 2439 GAGCATTCTCTTTTGCCTTTTTAAACAAATCCCTCACTCTCGAAGCCCCAACACCAACAA 2380 Query 12973 ACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCG 13031 ||||||| ||||| | | ||||| || | | || ||||| | ||| ||||| Sbjct 2379 ACATCTCAACAAATTCCGACCCGGAA-ATCGAAAAAAACGGGACCCCCGCTTCCCCCGCA 2321 Query 13032 ATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081 || || || || || || ||||| ||||| || ||| ||||||| Sbjct 2320 ATCGCCTTCGCCAGAAGAGTTTTCCCGGTCCCGGGCGGGCCCACGAGAAG 2271 >seq6274 Length=8207 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 116897 ||| || | ||| || | |||||| || ||||| ||||||| || || || | || || Sbjct 4822 CAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACC 4881 Query 116898 CTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 ||| | || ||| | |||| ||||| | || || | ||||| || || | ||| Sbjct 4882 CTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACAT 4941 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT---GTTGGCTCT 117011 |||||| ||||||| |||| |||||||| || || || | |||| |||| |||| Sbjct 4942 TGGAATAATACCATTAGATGTTCCATTTGTGCCACGTAT--GTAACTTCCAGTTG-CTCT 4998 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGC 117044 || || || | | ||||||||||||||| Sbjct 4999 GATATTATGCACAGAGACACCAATACCCCCTGC 5031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606788452587600