Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq48246 95.1 2e-14 >seq48246 Length=4099 Score = 95.1 bits (104), Expect = 2e-14 Identities = 270/408 (66%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| || |||||||| |||| | || || |||||| | | || |||||| Sbjct 1307 TTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAGTTCCATCCAATCAAACGGGTTC 1366 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 | | | || ||| | |||| | || ||| ||||| || || || |||||| Sbjct 1367 TGGGCATTGTACAATTTCCCATATCCCAATGCACCCAATAACCTATCAGCAACGAATTCG 1426 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCC--CAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||| || |||| | || | ||| ||||| || ||| || || | || || Sbjct 1427 ATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAGAGCACAA--GGTAAGGCATCGC 1484 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | | ||||| | |||||||| ||||| |||| || || | ||| ||||| | | Sbjct 1485 AGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGATTCCCTTGACTCGTTCCTCAC 1544 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||| | | || || ||| || | |||||||| || ||||| | ||||| Sbjct 1545 TCAGCTTCGTCTTCA-GTAACCCATAA--AGCAAACACGCAAAATCACAGTGTAATCCCT 1601 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || ||||| || ||||| || | | | | || ||||| | |||||| || | Sbjct 1602 CATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAGGCATCAACCCACGTTTCTTCA 1661 Query 160008 GCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACG 160054 ||||||||| | |||| |||| ||| ||| || ||||| || ||| Sbjct 1662 ACCAAAAAATCG-CGCAGAAGCTTCCGGAAAAGAAAATCCCTTCAACG 1708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786447157221600