Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq161151 116 4e-21 seq102355 109 6e-19 seq90319 107 2e-18 seq107820 104 3e-17 seq86036 95.1 1e-14 seq40887 95.1 1e-14 seq35420 95.1 1e-14 seq75854 93.3 5e-14 seq50039 93.3 5e-14 seq27206 87.8 2e-12 >seq161151 Length=1962 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 1307 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1366 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | || |||||||||| |||||| | ||| | | Sbjct 1367 GATGAGACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTT-TGCTTTCACAT 1425 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| |||||| || || ||||| || ||||| | Sbjct 1426 TGTCGATCGTGTCAGAGGACTCTACCTCCAACGTGATCGTCTTACCCGTTAGGGTTTTCA 1485 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 1486 CGAAGATCTGCAT 1498 >seq102355 Length=2708 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| || || || |||| || ||||| || |||||||| Sbjct 1048 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAA 989 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| |||| || | | |||||||| ||||| |||| | ||| Sbjct 988 GATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTTGTCTTCA-CGT 930 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| |||||| || || || ||||| |||| Sbjct 929 TGTCGATTGTGTCCGAGCTC---TCCACCTCCAACGTGATCGTCTTTCCGGTCAGGGTTT 873 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 872 TGACGAAGATTTGCAT 857 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/248 (68%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | || || |||||||||||||| |||| Sbjct 857 TGCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGG 798 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| || |||| |||||||| || |||||||| || | || || || || | | Sbjct 797 CGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAG 738 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATT 46541 | | | ||||||||| |||||| | || | | | | ||| ||| ||| | Sbjct 737 GAATTCCTTCCTTGTCCTGTATCTTCGTTTTAACATTGTCGATCGTATCGGAACTC---T 681 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT---TGC 46598 | || || | || || || || ||||| || ||||| ||||| || ||||| | | | Sbjct 680 CGACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCATCTAAATTC 621 Query 46599 ACAAACAA 46606 |||||||| Sbjct 620 ACAAACAA 613 >seq90319 Length=2932 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || || | |||| || ||||| || |||||||| Sbjct 1207 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAAG 1266 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||| ||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 1267 ATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 1325 Query 46523 GCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| ||||| |||| ||||||||||| || |||| ||||| Sbjct 1326 GTCGATGGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTT 1382 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 1383 CACAAAGATCTGCAT 1397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| | ||| || |||| ||||| ||||| |||||||| Sbjct 1662 CTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 1721 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||||| | || | | |||||||| ||| ||| ||||| ||| Sbjct 1722 GATAAGTCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGT 1780 Query 46522 CGCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | |||||| ||| || || || | |||||||| || || || || || | Sbjct 1781 TGTCTATGGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTACCAGTAAGGGTCT 1837 Query 46578 TAACAAAGATTTGCAT 46593 |||| ||||||||||| Sbjct 1838 TAACGAAGATTTGCAT 1853 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| || || || |||| || ||||| || |||||||| Sbjct 1434 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCTAGCTGTTTTCCGGCGAA 1493 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||| || | || | | |||||||| |||||| || | | Sbjct 1494 GATCAATCTTTGCTGATCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCTTTCACGTT 1553 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || | |||||||| || || || || ||||| || Sbjct 1554 ATCGATGGTGTCGGAGCTTTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGAGTTTTGAC 1613 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 1614 GAATATTTGCAT 1625 >seq107820 Length=2620 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || | |||| || || || || |||||||| Sbjct 2059 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCTGCCGTCCTCAAGTTGTTTCCCGGCGAA 2118 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||| ||||||| ||| | | Sbjct 2119 AATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATT 2178 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||||| || |||| ||| || || || || || || ||||| || Sbjct 2179 GTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATCGTCTTCCCAGTTAGGGTTTTCAC 2238 Query 46582 AAAGATTTGCATTTT 46596 ||||| |||||||| Sbjct 2239 GAAGATCTGCATTTT 2253 >seq86036 Length=3019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| || || || |||| || ||||| || |||||||| Sbjct 702 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAA 761 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| || |||| || | | |||||||| |||||| |||| | ||| Sbjct 762 GATGAGACGCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTCGTCTTCA-CGT 820 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | || || |||| || || |||| |||||| || || || || || |||| Sbjct 821 TGTCGATTGTATCAGAGCTC---TCGACCTCCAACGTGATCGTCTTTCCGGTTAGGGTTT 877 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||| ||||| Sbjct 878 TGACGAAGATCTGCAT 893 >seq40887 Length=4418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||||| || ||||| |||| || ||||| || |||||||| Sbjct 2264 CTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTACCGGCGAA 2205 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||| ||||| | || | | |||||||| ||| || |||| ||| Sbjct 2204 GATCAACCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATTTTAGCTTTGA-CGT 2146 Query 46522 CGCC-ACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| ||| || |||| ||||| ||||| || || || |||| Sbjct 2145 TGTCGATGGTGTCAGAGCT---TTCGACTTCCAAGGTGATAGTTTTTCCGGTGAGAGTTT 2089 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||||||||| Sbjct 2088 TGACGAAGATTTGCAT 2073 >seq35420 Length=4697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | || ||||| | || ||||| ||||| |||||||| | Sbjct 1676 CCTCCCCTGAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCG 1617 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||||||||| |||||||| ||||| | ||||||||| | || Sbjct 1616 AGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGTGGA 1557 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| ||| || | ||| ||| | | | ||||| |||| || Sbjct 1556 ATACCTTCCTTGTCCTGGAT-TTTTGCTTTCACGTTGTCGATTGTGTCGGAGCTC---TC 1501 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| || || || || || || || ||||| ||||| Sbjct 1500 GACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||||| || || || |||| || |||||||| |||||||| Sbjct 1413 CTCTTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 1354 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || |||||||| ||| || || | ||| Sbjct 1353 GATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGT 1295 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || | |||||||| || || || || || |||| Sbjct 1294 TGTCGATGGTGTCGGAGCTTTCGACCTCTAGGGTGATGGTCTTACCGGTGAGGGTCTTAA 1235 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 1234 CGAAGATTTGCAT 1222 >seq75854 Length=3247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| ||||||| ||| || | |||| |||||||||||||||||||| Sbjct 2832 CTCCTTTTGGATATTATAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCGAA 2891 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || || | || | | ||||||||| |||||| | |||| ||| Sbjct 2892 GATGAGCCGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTTTTGA-CGT 2950 Query 46522 CGCCACCGTGTCGCTCGA--TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 || | || || | ||||| || | || || || || || || || ||||| Sbjct 2951 TATCAATG-GTATCTGAACTCTCCACCTCGAGAGTAATCGTCTTCCCAGTTAGTGTTTTC 3009 Query 46580 ACAAAGATTTGCATTTT 46596 |||||||| ||||| || Sbjct 3010 ACAAAGATCTGCATATT 3026 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || | ||| ||||||||||| || ||||||||||| || || |||| | Sbjct 2341 CCTCCCCTCAACCTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCGGCT 2400 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | | || || | |||||| || || || |||| ||||| || || | || Sbjct 2401 AAAGTTCTACCATCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCGGTGGA 2460 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| ||||| ||| | | | | ||| || ||| || Sbjct 2461 ATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCGATCGTATCAGAACTTTCAACC 2520 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| ||||| || || | ||| ||||| ||||| |||||| Sbjct 2521 TCCAATGTGATTGTTTTTCCAGTTAACGTCTTAACGAAGATCTGCATT 2568 >seq50039 Length=4031 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| ||| || | ||||| || ||||| || |||||||| Sbjct 1024 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCGGCGAAG 1083 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || ||||| || | || | || |||||||| ||| ||| |||| | Sbjct 1084 ATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTGACATTG 1143 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||||| || || | ||||||||||| || || || ||||| || Sbjct 1144 TCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTTTTTACG 1203 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 1204 AAAATCTGCAT 1214 >seq27206 Length=5223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| || |||| ||| || | |||| |||||||||||||||||||| Sbjct 3322 CTCCTTTTGGATATTATAATCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCGAA 3381 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || || | || | | ||||||||| |||||| |||| | Sbjct 3382 GATGAGCCGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 3441 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || ||| ||| ||||| || | || || || || ||||| || ||||| Sbjct 3442 ATCAATGGTATCGGAACTC---TCCACCTCGAGAGTAATCGTCTTCCCCGTTAGGGTTTT 3498 Query 46579 AACAAAGATTTGCATTTT 46596 || ||||| ||||| || Sbjct 3499 CACGAAGATCTGCATATT 3516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559048262317200