Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq102355 122 6e-23 seq75854 116 3e-21 seq27206 111 1e-19 seq86036 104 2e-17 seq40887 104 2e-17 seq48514 102 6e-17 seq107820 84.2 2e-11 >seq102355 Length=2708 Score = 122 bits (134), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 ||| || || || | ||| || || | ||||||||| || || || || |||||||| Sbjct 1543 ATCACCACCACGAAGACGAAGAACAAGGTGCAAAGTGGACTCCTTCTGGATGTTATAATC 1484 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 |||||| || |||| |||||||| |||||| | || || || ||||| ||||||| Sbjct 1483 AGCCAAAGTTCGCCCATCTTCCAATTGCTTCCCGGCGAAGATCAATCGCTGTTGATCCGG 1424 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTT 39666 || | || || || || ||||| || | | ||| || || || | |||| Sbjct 1423 TGGAATCCCCTCCTTATCCTGGATTTTAGCCTTCACGTTATCGATA--GTATCAGAGCTT 1366 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||| ||| || ||||||||||||||||| || || ||||||||||| Sbjct 1365 TCCACCTCCAGAGTTATAGTTTTACCCGTTAAAGTCTTCACAAAGATCTGCAT 1313 >seq75854 Length=3247 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| | || |||| ||||||||| ||| ||||| || ||||||| Sbjct 2337 CATC-CCTCCCCTCAACCTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAAT 2395 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| ||| | |||| ||||| || || || |||| || | |||||| ||||||| Sbjct 2396 CGGCTAAAGTTCTACCATCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCG 2455 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||||||||| ||| || || || |||| | || || | || Sbjct 2456 GTGGAATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCG--ATCGTATCAGAACT 2513 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || ||||| || |||||||| || ||||| || || |||||||||||||| Sbjct 2514 TTCAACCTCCAATGTGATTGTTTTTCCAGTTAACGTCTTAACGAAGATCTGCAT 2567 >seq27206 Length=5223 Score = 111 bits (122), Expect = 1e-19 Identities = 167/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| | ||| || | ||||||||| ||| ||||| || ||||||| Sbjct 2827 CATC-CCTCCCCTCAATCTCAGAACAAGATGCAAAGTCGATTCCTTTTGAATGTTATAAT 2885 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || ||| | |||| ||||| || |||||| |||| || | |||||| ||||||| Sbjct 2886 CAGCTAAAGTTCTACCATCTTCCAACTGCTTCCCGGCAAAGATCAGACGCTGTTGATCCG 2945 Query 39608 AGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||||||||| | || || | || |||| | || || | || Sbjct 2946 GTGGAATCCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCG--ATCGTATCAGAACT 3003 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | ||| |||||||| || ||||| || || |||||||||||||| Sbjct 3004 TTCAACCTCTAGAGTGATTGTTTTCCCGGTTAACGTCTTGACGAAGATCTGCAT 3057 >seq86036 Length=3019 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 ||| || || || | ||| || || | ||||||||| || || || || |||||||| Sbjct 207 ATCACCACCACGAAGACGAAGAACAAGGTGCAAAGTGGACTCCTTCTGGATGTTATAATC 266 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || || || |||| |||||||| ||||| |||| || || | ||| ||||| | Sbjct 267 AGCTAACGTACGACCATCTTCCAATTGCTTCCCTGCAAAGATCAACCTCTGTTGATCAGG 326 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTT 39666 || | || || || || ||||| || | | ||| || || || | |||| Sbjct 327 TGGGATCCCCTCCTTATCCTGGATTTTAGCCTTCACGTTATCGATA--GTATCAGAGCTT 384 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||| || || ||||||||||||||||| || |||||||||||||| Sbjct 385 TCCACCTCCAGCGTTATAGTTTTACCCGTTAAAGTCTTCACGAAGATCTGCAT 437 >seq40887 Length=4418 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | ||| | ||| ||| || || || || || || || Sbjct 2527 CCTCCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 2468 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||||| ||| | || || | || |||||||| | ||| Sbjct 2467 AAGGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATAAGTCGTTGCTGATCTGGGGGA 2408 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| |||||| ||| | | |||| | |||||| | |||||||| Sbjct 2407 ATACCTTCTTTGTCTTGTATTTTAGCTTTGACATTGTCGAT--TGTGTCGGAGCTTTCCA 2350 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| || ||||||||||| || | ||| || ||||| ||||||||| Sbjct 2349 CTTCCAAGGTGATTGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCATG 2300 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTT 39562 || || |||||||||||||| || || || ||||||||||| || || || || Sbjct 3199 CGGAGAACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCAGC--AAGCGTACGAC 3142 Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| ||||| || ||||| |||| || || ||||||||||||| || | ||||| | Sbjct 3141 CATCCTCCAACTGCTTCCCTGCAAAGATCAACCGCTGCTGATCCGGTGGGATTCCTTCCT 3082 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 | || || || ||| | | | | ||||| | ||| || || ||||| |||| Sbjct 3081 TATCCTGAATCTTCGCTTTCACATTATCAATCGTGTCAGAGCTCTCAACCTCCAATGTAA 3022 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || || || || || |||||||| Sbjct 3021 TCGTCTTTCCAGTCAACGTCTTCACAAATATCTGCAT 2985 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || ||||| || ||||| || | || || | ||||| ||| | || Sbjct 2719 TCCTTCTGGATGTTATAGTCCGCCAATGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAG 2660 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||| ||||| || | ||| | ||||| ||||| ||||| ||| | ||| Sbjct 2659 ATGAGACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGA-CGTT 2601 Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||| | ||||||||| ||||| || |||||||| || || || ||||| || Sbjct 2600 GTCAATGGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTTCCGGTCAAGGTTTTCAC 2541 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 2540 AAAGATCTGCAT 2529 >seq48514 Length=4088 Score = 102 bits (112), Expect = 6e-17 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| | ||| |||| |||||||||| ||| ||||| || ||||||| Sbjct 2938 CATC-CCTCCCCTCAACCTCAGAACCAGATGCAAAGTGGATTCCTTTTGGATGTTATAAT 2996 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || ||| | |||| ||||| || || || | || || | ||| || ||||||| Sbjct 2997 CAGCTAAAGTTCTACCATCTTCCAACTGCTTACCAACGAAGATCAGACGTTGTTGATCCG 3056 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||||||||| ||| || || || |||| | || | | ||| Sbjct 3057 GTGGAATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCG--ATCGTATTAGAGCT 3114 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || |||| || | |||||| || ||||| || || |||||||||||||| Sbjct 3115 TTCAACCTCCAGTGTGACTGTTTTTCCAGTTAACGTCTTGACGAAGATCTGCAT 3168 >seq107820 Length=2620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||||||| | ||||| | ||||||||| |||| || | |||||| ||| Sbjct 2096 TCCTCAAGTTGTTTCCCGGCGAAAATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTG 2155 Query 39625 TCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 || || || || | | |||| | |||||| | | ||| || ||||| |||| Sbjct 2156 TCTTGGATCTTCGCCTTCACATTGTCGAT--TGTGTCGGAGGATTCAACCTCCAACGTAA 2213 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || |||| ||||| |||||||||||||| Sbjct 2214 TCGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCAT 2250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343660529615630