Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq159469 185 1e-41 seq30067 179 4e-40 seq493767 87.8 2e-12 >seq159469 Length=1977 Score = 185 bits (204), Expect = 1e-41 Identities = 314/454 (69%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 41060 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 41119 ||||||||| |||||||| | ||| | || |||| || || |||||| | || || Sbjct 1726 TTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGT 1667 Query 41120 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 41179 ||| |||||||| || ||||| |||||| |||| |||| | |||| | | Sbjct 1666 ACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAA 1607 Query 41180 TTCTCTTAACGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 41236 ||| |||| ||| || |||| || || || ||| | |||||||||||||| || Sbjct 1606 CTCTATTAATGCTACTACTAGCTCT---ATTGTTAAATATGTATCACAACGTGCTGGAAT 1550 Query 41237 TGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGT 41296 || |||| |||||||| |||||||| | || | || | |||||||| | Sbjct 1549 CGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATT 1490 Query 41297 TCATACTGGTGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACA 41356 |||||||||| || ||||| | ||||| | |||| || || |||||||||||||| Sbjct 1489 TCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACA 1430 Query 41357 GGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGA 41416 || || || | || || |||||||| | | |||||| | |||||| | |||||||| Sbjct 1429 AGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 1370 Query 41417 AAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGA 41476 || | | || || || || || | ||| | |||||||| | || |||||| |||| Sbjct 1369 AAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGA 1310 Query 41477 TTACGGTGTACAGCTTAACCAGTTGATGTATAAA 41510 ||||| | || |||| | || |||||| || Sbjct 1309 TTACGCACTTCAAATTAATAAATTAATGTATCAA 1276 >seq30067 Length=5021 Score = 179 bits (198), Expect = 4e-40 Identities = 313/454 (69%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 41060 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 41119 |||||| || || ||||| | ||| | || |||| || ||||||||| | || || Sbjct 3283 TTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGT 3342 Query 41120 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 41179 | |||||||| || || || |||||| ||||||||| | |||| | | Sbjct 3343 CAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAA 3402 Query 41180 TTCTCTTAACGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 41236 ||| |||| || ||| |||| || || || ||| |||| ||||||||||| || Sbjct 3403 TTCCATTAATGCGACAACTAGCTCT---ATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 41237 TGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGT 41296 ||| |||| || ||||| ||||||||| | || | || | || ||||| | Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 41297 TCATACTGGTGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACA 41356 |||||||||| || ||||| | |||||| | |||| |||||| ||||| ||||| || Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 41357 GGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGA 41416 || || ||| | ||||| |||||||| | | |||||| | |||||| | |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 41417 AAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGA 41476 ||| | | || || || ||||||| || | |||||||| | || |||||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 41477 TTACGGTGTACAGCTTAACCAGTTGATGTATAAA 41510 || | | || |||| | || |||||| || Sbjct 3700 CTATGCAATTCAAATTAATAAATTCATGTATCAA 3733 >seq493767 Length=615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/332 (66%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 42814 AACCTATGTTTTTTGGTGAAGATACTGGTGTTGCACGTTATGAATCGCAGAAACACAAAG 42873 |||||||||||||||| || | | |||| || ||||| ||| ||| | || Sbjct 71 AACCTATGTTTTTTGGACAACCTGTAAATATTGCTCGATATGATCAGCAAAAATATAATA 130 Query 42874 TTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42933 | || ||| || | |||||||| | || || || ||| | || || ||| | |||| Sbjct 131 TATTTGAACAACTAATTGAAAAACAATTATCATTTTTTTGGAGACCTGAGGAAATAGATC 190 Query 42934 TGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAAAATCATTTTCGATT 42993 | |||| || || || | | | ||| || || || ||||||||| |||||| | Sbjct 191 TTTCTAGAGATCGAATAGATTTTCAAAATCTACCGGATCATGAAAAACACATTTTTATTA 250 Query 42994 CTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCAT 43053 ||| || | |||||||| | | ||| | ||||| ||| | | ||||| | || | Sbjct 251 GTAATTTAAAATATCAAACATTACTTGATTCAATTCAAGGAAGAAGTCCTAATATAGCTT 310 Query 43054 TTTTGCCAATTGCATCCGATGTGAGCA-TGGAAACCTGGATCGAAACGTGGGCGTTTAGT 43112 |||| || ||| | | || || | ||||||| ||||| ||||| ||| | ||| Sbjct 311 TTTTACCTATT-ATTTCTATTCCAGAACTGGAAACATGGATTGAAACATGGTCTTTTTCA 369 Query 43113 GAAACCATCCACAGCCGTAGTTACACGCATAT 43144 ||||| || || ||| ||| || ||||| Sbjct 370 GAAACTATTCATTCACGTTCTTATACTCATAT 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551955596817600