Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq30067 174 2e-38 seq159469 170 2e-37 >seq30067 Length=5021 Score = 174 bits (192), Expect = 2e-38 Identities = 302/439 (69%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 144924 TGGATTCCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGA 144983 || ||| | ||||| | ||| || | | ||||| |||| ||| |||| ||||| | | Sbjct 3711 TGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAA 3652 Query 144984 ACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 145043 || | | |||||||||||| |||||||| || |||||| || ||| ||||| || || Sbjct 3651 ACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCT 3592 Query 145044 CGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATA 145103 | | || ||||| ||||| ||||| ||||| | || |||||||| | || || ||| Sbjct 3591 CTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATA 3532 Query 145104 ACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCA 145163 ||| ||||| |||| || | | |||| || ||| || ||||| || Sbjct 3531 CAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCT 3472 Query 145164 ACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTG 145223 | || |||||||| || ||||||| |||| |||| || || ||| ||| || Sbjct 3471 GCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCA 3412 Query 145224 TTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTC 145283 ||||| || || | || | |||||| | ||||||||||||||||| ||||| Sbjct 3411 TTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGTA 3352 Query 145284 GGTGTACGCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCTGACGAGTACTTACAGCA 145343 || || | |||||| |||||| || || || || |||| | | |||| | |||| Sbjct 3351 GGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGCA 3292 Query 145344 TCATAAAAACGAATAATAT 145362 | ||||||||| ||||| Sbjct 3291 TTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 170 bits (188), Expect = 2e-37 Identities = 297/432 (69%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 144931 CGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGCA 144990 |||| || ||||| || | | ||||| |||| || | |||||||| | ||| | | Sbjct 1305 CGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATA 1364 Query 144991 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 145050 | |||||||||| |||||||| || |||||| || ||| ||||| || || | | || Sbjct 1365 AACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTC 1424 Query 145051 CACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGG 145110 | ||||||||||| ||||| || ||| | || || ||||| | || || ||| ||| | Sbjct 1425 CGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAG 1484 Query 145111 TATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGA 145170 |||| ||||||| | | |||| || ||| || ||||| || | || | Sbjct 1485 TATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAA 1544 Query 145171 TACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTGTTAATAG 145230 |||| || || ||||||| || | |||| || || ||| ||| ||| ||||||| Sbjct 1545 TACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAG 1604 Query 145231 ATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGTAC 145290 | || | || | ||| || | |||||||||||||| || ||||| || || | Sbjct 1605 AGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTC 1664 Query 145291 GCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCTGACGAGTACTTACAGCATCATAAA 145350 | |||||| |||||| || || || || |||| | | |||| | |||| ||||| Sbjct 1665 GTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAA 1724 Query 145351 AACGAATAATAT 145362 |||| |||||| Sbjct 1725 AACGCTTAATAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545046498742800