Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq159469 178 1e-39 seq30067 158 1e-33 seq408088 84.2 2e-11 >seq159469 Length=1977 Score = 178 bits (196), Expect = 1e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 41110 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 41169 || ||||| |||||||| | |||| | |||||||| || || |||||| | || || Sbjct 1725 TTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGTA 1666 Query 41170 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCTGGTGATTCTCTGGGT 41229 || |||||||| |||||||| ||||||| ||||||||| || |||| | | Sbjct 1665 CGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAAC 1606 Query 41230 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAATATATCTCTCAACGTGCGGGTATCGGT 41289 ||| | || ||| ||| | | || || |||||| | || |||||||| || |||||| Sbjct 1605 TCTATTAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAACGTGCTGGAATCGGT 1546 Query 41290 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCAT 41349 | || || ||||| |||||||| | || || | ||||||||| | ||| Sbjct 1545 ATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATTTCAT 1486 Query 41350 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGT 41409 || || ||| || || | |||||| |||| | || || ||||| ||||| || || Sbjct 1485 ACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACAAGGC 1426 Query 41410 GGCGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41469 || || | || || || ||||| | | |||||| || |||||| |||||||||||| Sbjct 1425 GGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAAGT 1366 Query 41470 CTGCTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAA 41507 | | ||| | |||||||| | || |||||||||| Sbjct 1365 TTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAA 1328 >seq30067 Length=5021 Score = 158 bits (174), Expect = 1e-33 Identities = 303/447 (68%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 41110 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 41169 || || || || ||||| | |||| | |||||||| || || |||||| | || || Sbjct 3284 TTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGTC 3343 Query 41170 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCTGGTGATTCTCTGGGT 41229 | |||||||| ||||| || ||||||| |||| |||| || |||| | | | Sbjct 3344 AGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAAT 3403 Query 41230 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAATATATCTCTCAACGTGCGGGTATCGGT 41289 || | || || || | | || || |||||| | || |||||||| || || ||| Sbjct 3404 TCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAATTGGT 3463 Query 41290 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCAT 41349 | || || ||||| |||||||| | || || | || |||||| | ||| Sbjct 3464 ATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATTTCAT 3523 Query 41350 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGT 41409 || || ||| || || | ||||| |||| | || || ||||||||||| || || Sbjct 3524 ACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCAAGGA 3583 Query 41410 GGCGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41469 || ||| | ||||| || ||||| | | |||||| || |||||| ||||||||||||| Sbjct 3584 GGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAAAT 3643 Query 41470 CTGCTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGACTAT 41529 | | ||| | ||||| ||| | || |||||||||| | | ||||| | |||||| Sbjct 3644 TTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGACTAT 3703 Query 41530 GGCGTACAGCTTAACGATTTGATGTAT 41556 | | || |||| | || |||||| Sbjct 3704 GCAATTCAAATTAATAAATTCATGTAT 3730 >seq408088 Length=780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 49772 AAAAATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGC 49831 |||||| |||||||||||| | | ||| ||||| || ||||||||||||| ||| || Sbjct 615 AAAAAT---GGCCCTTTAGCTCAGT-GGTAAGAGCAGGCGACTCATAATCGCTTGGTCGC 670 Query 49832 TGGTTCGAATCCAGCAGGGGCCACCAA 49858 |||||| ||||||||| |||||| ||| Sbjct 671 TGGTTCAAATCCAGCAAGGGCCATCAA 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559399572388800