Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq30067 129 6e-25 seq159469 127 2e-24 >seq30067 Length=5021 Score = 129 bits (142), Expect = 6e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 142947 CATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTA 143006 ||||||| | ||| | | | |||||||||| ||| ||||||| || | ||| | || Sbjct 3704 CATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATA 3645 Query 143007 AATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTC 143066 ||||||||||||| |||||||| || |||||| || ||| ||||| || || | | | Sbjct 3644 AATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCTCTAACAC 3585 Query 143067 CACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAG 143126 | ||||| ||||| ||||| ||||| |||| |||||||| | || || ||| ||||| Sbjct 3584 CTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATACAACCAG 3525 Query 143127 TATG 143130 |||| Sbjct 3524 TATG 3521 >seq159469 Length=1977 Score = 127 bits (140), Expect = 2e-24 Identities = 271/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 142970 TTTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAA 143029 |||||||||| || | || || || | ||| | |||| |||||||||| |||||||| Sbjct 1328 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCAT 1387 Query 143030 ATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACA 143089 || |||||| || ||| ||||| || || | | ||| ||||||||||| ||||| || Sbjct 1388 ATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACG 1447 Query 143090 GCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTAACTTCGCCCATACCG 143149 || |||| || ||||| | || || ||| ||||||||| |||| || | | Sbjct 1448 GCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTA 1507 Query 143150 ATTTTCGAACCTTCGGCACGAATCATGCCAACGTTGATACCGATACCTGCACGCTTACTG 143209 || ||| || ||||| || | || |||||||| || ||||| | || Sbjct 1508 ATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG--TTGTG 1565 Query 143210 AT--ATATTCGATGATTGAATTAGCAGTCTTATTAATTGACTTCAGGGAGTCAGCCGCTT 143267 || ||||| | || || ||| ||| |||||| || || | ||||| || Sbjct 1566 ATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATT 1625 Query 143268 CGATAACCACGCAGGAACTGAACTGTCTGGTAGGTGTTCTGGCGCCGGCCATGATAGGCG 143327 |||| | || || ||||| ||||| | ||||| |||| | || | ||| || || | Sbjct 1626 CGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTG 1685 Query 143328 TGGGCAACGAAACCTGTCGAGTGGATACTGCATCATAAAAACG 143370 | || || |||| | ||| || | ||||| ||||||||| Sbjct 1686 TTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAACG 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539830651914000