Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq30067 125 1e-23 >seq30067 Length=5021 Score = 125 bits (138), Expect = 1e-23 Identities = 273/409 (67%), Gaps = 0/409 (0%) Strand=Plus/Minus Query 129056 ACATCAGCTTATTGATTTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGC 129115 |||| | ||||| ||||| || | ||||| | ||| || | || |||||||||| | Sbjct 3728 ACATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTC 3669 Query 129116 CCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATA 129175 || |||| || || | || | | ||||||||||| | ||||| ||||| ||| | | Sbjct 3668 CCCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAA 3609 Query 129176 GAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGT 129235 |||||| || || || | |||||| || || ||||| ||||| || | || || | Sbjct 3608 TAGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAAT 3549 Query 129236 ATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGATCCCT 129295 ||| |||| || ||| ||| ||||| |||| ||| | | ||| || ||| Sbjct 3548 GTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTA 3489 Query 129296 CGGCACGAATCGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATATAGTCAACGA 129355 || ||||| || | || || || || ||||| |||| | | ||| | ||| | Sbjct 3488 ATGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAA 3429 Query 129356 TAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACACAAG 129415 |||| |||| || || || ||| || | | || ||||||| || ||||||| Sbjct 3428 TAGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAG 3369 Query 129416 AGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGG 129464 | ||||| || ||||| || || | || || | | ||| || ||||| Sbjct 3368 AACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGG 3320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712836619876800