Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq30067 132 5e-26 >seq30067 Length=5021 Score = 132 bits (146), Expect = 5e-26 Identities = 296/438 (68%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 141455 ATTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTT 141514 ||| ||||||| |||| || | ||||| | | |||||||||| || ||||||| Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 141515 CTTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGA 141574 || || || | || ||||| ||||||| ||||| || || | || || ||||| | Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 141575 ACCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAA 141634 || | || ||| ||||||||||| | | || || | ||| || || | || Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 141635 AGGTACTACG-CCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAA 141693 ||||| ||| ||||| || |||| || | ||| ||| || |||| Sbjct 3538 AGGTA-TACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAA 3480 Query 141694 TCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAG--A 141751 | ||||| ||||| || || || || || | |||||||| |||||||||| || | Sbjct 3479 TTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAG-AGCTA 3421 Query 141752 GTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAA 141811 ||| | |||| || || | | | ||| || ||||||| | ||||| ||||| || Sbjct 3420 GTTGTCG-CATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAA 3362 Query 141812 TTGACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGT 141871 ||||||||| || || | || |||| ||||||||| || || || || |||||| ||| Sbjct 3361 TTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGT 3302 Query 141872 TGAAACAGCTTCATAAAA 141889 |||| ||| | ||||| Sbjct 3301 AGAAATAGCATTGTAAAA 3284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519220461046800