Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq30067 159 4e-34 seq159469 132 5e-26 >seq30067 Length=5021 Score = 159 bits (176), Expect = 4e-34 Identities = 298/438 (68%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 137901 TTGATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 137960 || ||||||| |||| || | ||||| | || ||||| || | || ||||||| Sbjct 3717 TTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTT 3658 Query 137961 TTAAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCG 138020 || | || | | || |||||||||| ||||| |||||||| | | || || || Sbjct 3657 TTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 3598 Query 138021 CCACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 138080 ||||| | || || ||||| |||||||| || || || |||| | ||||| | ||| Sbjct 3597 CCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAA 3538 Query 138081 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATC 138140 || ||| |||||||| |||||||| | || ||| ||| ||||| Sbjct 3537 GGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATT 3478 Query 138141 ATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCT 138200 ||||| ||||| || || |||||||||| || | || | ||||| || || | Sbjct 3477 TGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTT 3418 Query 138201 GATTTGTTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGA 138260 | ||||| || || | |||| || |||||| | ||| |||||||| |||||| Sbjct 3417 GTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGA 3358 Query 138261 CGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTTCTTAGTTGAC 138320 ||||||||||| | | || | ||| ||||| ||||| | |||||||| ||| || Sbjct 3357 CGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAA 3298 Query 138321 ACAGCATCATAAAAACGA 138338 | ||||| ||||||||| Sbjct 3297 ATAGCATTGTAAAAACGA 3280 >seq159469 Length=1977 Score = 132 bits (146), Expect = 5e-26 Identities = 294/440 (67%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 137901 TTGATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 137960 || ||||||| | ||||| | ||||| | || ||||| || | ||| | || || Sbjct 1292 TTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTT 1351 Query 137961 TTAAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCG 138020 || | || | | | |||||||||| ||||| |||||||| | | || || || Sbjct 1352 TTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 1411 Query 138021 CCACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 138080 || || | ||||||||||| ||||| || || || || |||| | |||||| | ||| Sbjct 1412 CCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAA 1471 Query 138081 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCT---GCACGA 138137 || ||| |||||||| |||| ||| | || | || | || || ||| Sbjct 1472 GGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATA---GGACTTCCTAACGCGCGA 1528 Query 138138 ATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCA 138197 || || || ||||| ||||| |||||||||| || | || | ||||| || | Sbjct 1529 ATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTA 1588 Query 138198 GCTGATTTGTTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAAT 138257 | | ||||| || || | |||| || ||| || | ||| |||||||| || Sbjct 1589 GTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAAC 1648 Query 138258 TGACGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTTCTTAGTT 138317 |||||||||||||| || | || | ||| || || ||||| | |||||||| ||| Sbjct 1649 TGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTA 1708 Query 138318 GACACAGCATCATAAAAACG 138337 || | |||| ||||||||| Sbjct 1709 GAAATTGCATTATAAAAACG 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523800151800000