Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1209 129 7e-25 seq17013 120 4e-22 seq107321 95.1 1e-14 seq29544 89.7 6e-13 seq6274 86.0 8e-12 seq169967 82.4 9e-11 seq23164 82.4 9e-11 >seq1209 Length=11671 Score = 129 bits (142), Expect = 7e-25 Identities = 244/352 (69%), Gaps = 8/352 (2%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAA 15975 |||||| |||||| | ||||| || || || | |||| |||||| || ||| | |||| Sbjct 2618 ATCAAGAATATCAGCACGATTAGTAGCTGCAACAACAATAATACCCGTATTCCCT-TCAA 2560 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| || ||||||||||| || | || ||||||| |||||||||| | | Sbjct 2559 ATCCATCCATTTCAGTCAAAAGCTGATTCAATGTCTGTTCCCTTTCATCATTCCC--ACC 2502 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | ||| | || || |||||||||||||||| || || || || Sbjct 2501 TCCAATTCCAGTTCCTCTTTGTCTCCCAACTGCATCAATCTCATCAACAAACACAATACA 2442 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || || || ||| | ||||| || | | || || |||||||| Sbjct 2441 CGGAGCATTCTCTTTTGCCTTTTTAAACAAATCCCTCACTCTCGAAGCCCCAACACCAAC 2382 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | ||||| || | | || ||||| | ||| |||| Sbjct 2381 AAACATCTCAACAAATTCCGACCCGGAA-ATCGAAAAAAACGGGACCCCCGCTTCCCCCG 2323 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 |||| || || |||||||| || || || || ||| ||| |||| || Sbjct 2322 CAATCGCCTTCGCCAGAAGAGTTTTCCCGGTCCCGGGCGGGCCCACGAGAAG 2271 >seq17013 Length=6145 Score = 120 bits (132), Expect = 4e-22 Identities = 208/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| |||||||| | || |||||||||||||||| |||||||||| | Sbjct 1413 AAAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACC 1354 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||| |||| | ||| |||| || ||||| || ||||||||||| || ||||| Sbjct 1353 ACCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCA 1294 Query 16094 TGGTTGATTTTCGCGAGCGAC--TTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 || || |||| | || | |||||| | ||||| || || || | || || |||| Sbjct 1293 AGG-TGCTTTT-GATTTCGCCTTTTCAAACAAATCCC-TA-ACTCTAGATGCACCAACAC 1238 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||| | ||| || || | || || | |||| || || || ||| || ||| | Sbjct 1237 CCACAAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTC 1178 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 | || | || | || | ||| ||||| || || ||||| ||| ||||||| Sbjct 1177 CGGCCACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGGTGGTCCCACGAGGAG 1123 >seq107321 Length=2628 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| || || || || |||| || || || || || |||||||||||||| || | Sbjct 1132 CCTTCGCAGAACGGATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGCAGTT 1191 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||||| || | |||||||| || ||||| || |||||||| || ||||| |||| Sbjct 1192 TCTGCGCCATATTCTGGCTCAAAAAACGAGGGCTTATGCCAGGGCTAACATTCTCGAACG 1251 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 | | ||||| || |||||||| Sbjct 1252 AATTGATCTCGCGAGACGAGGG 1273 >seq29544 Length=5055 Score = 89.7 bits (98), Expect = 6e-13 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 2187 AATTACAGGGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2246 Query 13782 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAAACAA-ATCAT 13840 || || |||||| | ||||||| |||| ||||| || |||| | | || |||| Sbjct 2247 CCACGAAGAGGTGAAAACTTTGTCACCAGAAAGATCACA-AGGGCAGTAGGCAGGATCAA 2305 Query 13841 GAAGGGT--GAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGT 13898 || ||| | |||| | ||| ||||| || || | || |||||||||||| Sbjct 2306 GATCGGTCTGCAAAGCAAACTATTC--TTGGGGAATTTACAAGCTTCAAGAGATTGGGGT 2363 Query 13899 CACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGA 13957 || |||||| || ||||| |||||| | ||||| || || || ||||| || || Sbjct 2364 TTTGCAGGGGACTACGTGGAAGCAATGTGGTTGATGCTACAGCAGGA-TAAGCCAGATGA 2422 Query 13958 ATATGTAGTAGCAAC 13972 ||||| || ||||| Sbjct 2423 CTATGTGGTGGCAAC 2437 >seq6274 Length=8207 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || |||||||| ||| ||||||||||||||||| | || || ||||| | ||| || Sbjct 4974 GGCACAAATGGAACATCTAATGGTATTATTCCAATGTTGCGTGTGTTTAATGACACTGCT 4915 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || ||||| |||||| || || | ||||| | | || || ||| | || ||| Sbjct 4914 CGATATGTTGACCAAGGAGGTGGTAAAAGAAAGGGTGCATTTGCTGTTTATTTGGAACCA 4855 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTG 112052 ||||| || |||||| | ||||| ||||| ||| Sbjct 4854 TGGCATGCTGATATCTTTGAGTTTCTTGATTTG 4822 >seq169967 Length=1880 Score = 82.4 bits (90), Expect = 9e-11 Identities = 272/412 (66%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 15846 TCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGGCGA 15905 || ||||| |||| | ||| || | ||| | | ||||||||| ||||| || || Sbjct 967 TCTCGTCCACGAATATCTGGAAGCGGTACAATAACTTGACGATCAAAACGACCGGGACGT 908 Query 15906 AGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG-- 15963 | | || ||| | | |||| | ||| || || || || | || || ||| Sbjct 907 AATAAAGCAGGATCTAAAACATCAGGTCTATTAGTAGCAGCTATTAAAATAACACCCTCA 848 Query 15964 TTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCAT 16023 |||| |||||| |||||||| ||| || | || |||| || || || | ||||| Sbjct 847 TTTCC--ATCAAATCCATCCATTTCTACTAACATTTGATTAAGTGTCTGCTCTCTTTCAT 790 Query 16024 CAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATG 16082 ||| || | || ||||||| | ||| ||| || |||||||| |||||||| Sbjct 789 CATGTCCACCACCTAAT-CCAGCACCTCTTTGACGTCCTACAGCATCAATTTCATCAATA 731 Query 16083 AAGACGATGCATGGTT--GATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG- 16139 || | || || ||| ||||||| || | |||||| | ||||| ||| | ||| Sbjct 730 AAAATTATACAAGGTGCAGATTTTCTTGAATG--TTCAAACATATCCCTTACTC--TTGA 675 Query 16140 -GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGA 16197 || ||||| ||||||||||| || ||||| | | | ||| |||| | || || | Sbjct 674 AGCTCCCACTCCAACAAACATTTCAACAAAATCAGAACCAGAA-ATTGTAAAAAAAGGTA 616 Query 16198 CATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | |||| ||| || || || ||| || || | || ||||| ||||| || Sbjct 615 CTTTAGCTTCTCCAGCTATAGCTTTTGCAAGTAATGTTTTACCAGTACCAGG 564 >seq23164 Length=5532 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 112526 AACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 112585 |||| | || | |||||| |||| | |||||||| ||||| |||||| ||||| ||||| Sbjct 2944 AACTATTACTACAAACCTCAACAAAATTATTGATGTAAATTATTACCCTGTTGAAACTGC 3003 Query 112586 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGAT 112643 | ||| ||| | ||||| | || |||||| | || ||||||||||| || ||| Sbjct 3004 AAAAAGATCAAATCTTAGACATAGGCCTATTGGTATTGGAGTCCAAGGTCTTGCAGAT 3061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613944417199200