Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq48246 105 8e-18 >seq48246 Length=4099 Score = 105 bits (116), Expect = 8e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||| | || || |||| | ||||||||| | || | |||| Sbjct 1598 CCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAGGCATCAACCCACGTTTC 1657 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || | |||||| || || || || ||||| |||||||| || || || || || |||||| Sbjct 1658 TTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATCCCTTCAACGCAAGCGAAA 1717 Query 119634 GCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAACCACTTGAGAGCCCAGTTGG 119691 |||| | |||||| ||||| | |||| | | ||| ||| ||||||||||| || | Sbjct 1718 GCGATAATACGCTCTGCAAACGTCTCCGAGCCAT--CGATCCATTTGAGAGCCCAATTCG 1775 Query 119692 CCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 | || ||| | || || | ||| | ||| ||| ||| ||| || |||||| Sbjct 1776 CTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGAGT--CTGCTTTTC 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582525902958000