Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1209 134 2e-26 seq17013 129 7e-25 seq48246 107 2e-18 seq169967 91.5 2e-13 seq29544 89.7 6e-13 seq107321 87.8 2e-12 seq6274 86.0 7e-12 >seq1209 Length=11671 Score = 134 bits (148), Expect = 2e-26 Identities = 255/368 (69%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAA 9282 |||||| |||||| | ||||| || || || | |||| |||||| || ||| | |||| Sbjct 2618 ATCAAGAATATCAGCACGATTAGTAGCTGCAACAACAATAATACCCGTATTCCCT-TCAA 2560 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| || |||||||| || || | || ||||||| |||||||||| | | Sbjct 2559 ATCCATCCATTTCAGTCAAAAGCTGATTCAATGTCTGTTCCCTTTCATCATTCCCA--CC 2502 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | ||| | || || |||||||||||||||| || |||||||| Sbjct 2501 TCCAATTCCAGTTCCTCTTTGTCTCCCAACTGCATCAATCTCATCAACAAACACAATACA 2442 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || || ||| ||| | ||| | || || || || |||||||| Sbjct 2441 CGGAGCATTCTCTTTTGCCTTTTTAAACAAATCCCTCACTCTCGAAGCCCCAACACCAAC 2382 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | ||||| || | | || ||||| | ||| |||| Sbjct 2381 AAACATCTCAACAAATTCCGACCCGGAA-ATCGAAAAAAACGGGACCCCCGCTTCCCCCG 2323 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || || |||||||| || || || || ||| ||| |||| || | ||| Sbjct 2322 CAATCGCCTTCGCCAGAAGAGTTTTCCCGGTCCCGGGCGGGCCCACGAGAAGAACCCCCT 2263 Query 9580 GTGGAATC 9587 |||||| Sbjct 2262 TCGGAATC 2255 >seq17013 Length=6145 Score = 129 bits (142), Expect = 7e-25 Identities = 203/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 |||||||||||| |||||||| | ||| |||||||||||||||| |||||||||| | Sbjct 1413 AAAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACC 1354 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| |||| | ||| |||| || ||||| || ||||||||||| ||||| || Sbjct 1353 ACCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCA 1294 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| || ||||||| | ||| | ||| || || || ||||| || Sbjct 1293 AGGTGCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACTCTAGATGCACCAACACCCAC 1234 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||| | ||| || || | || || | |||| || || || ||| || ||| || || Sbjct 1233 AAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTCCGGC 1174 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9571 | || | || | ||| ||||| || || ||||| ||| ||||||| Sbjct 1173 CACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGGTGGTCCCACGAGGAG 1123 >seq48246 Length=4099 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||||||||||| || || | ||| || |||||| || || Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | || || |||||||||||| |||| |||||||| ||||| ||||| || Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAA 117451 || || || || || || || | || ||||| || || | |||| | || | Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTCCGAGCC-----ATCGA 1754 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 117507 |||||| | ||||| ||||| |||||||||| ||| || | ||| | ||| ||| Sbjct 1755 TCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCT 1810 >seq169967 Length=1880 Score = 91.5 bits (100), Expect = 2e-13 Identities = 272/411 (66%), Gaps = 14/411 (3%) Strand=Plus/Minus Query 9153 TCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGA 9212 || ||||| |||| | ||| || | ||| | | ||||||||| ||||| ||||| Sbjct 967 TCTCGTCCACGAATATCTGGAAGCGGTACAATAACTTGACGATCAAAACGACCGGGACGT 908 Query 9213 AGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTT 9272 | | || ||| | | |||| | ||| || || || || | || || ||| Sbjct 907 AATAAAGCAGGATCTAAAACATCAGGTCTATTAGTAGCAGCTATTAAAATAACACCC--- 851 Query 9273 TCATT---ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCA 9329 ||||| |||||| |||||||| ||| || | ||| |||| || || || | |||| Sbjct 850 TCATTTCCATCAAATCCATCCATTTCTACTAACATTTGATTAAGTGTCTGCTCTCTTTCA 791 Query 9330 TCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAAT 9388 |||| || | || ||||||| | ||| ||| || |||||||| |||||||| Sbjct 790 TCATGTCCACCACCTAAT-CCAGCACCTCTTTGACGTCCTACAGCATCAATTTCATCAAT 732 Query 9389 GAAGACAATACATGGTT--GATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG 9446 || | ||||| ||| ||||||| | | |||||| | ||| | || ||| Sbjct 731 AAAAATTATACAAGGTGCAGATTTTCTTGAATG--TTCAAACATATCCCTTACTCTTGAA 674 Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGAC 9505 || ||||| ||||||||||| || ||||| | | | ||| |||| | || || || Sbjct 673 GCTCCCACTCCAACAAACATTTCAACAAAATCAGAACCAGAA-ATTGTAAAAAAAGGTAC 615 Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| ||| || || || ||| || || | || ||||| ||||| || Sbjct 614 TTTAGCTTCTCCAGCTATAGCTTTTGCAAGTAATGTTTTACCAGTACCAGG 564 >seq29544 Length=5055 Score = 89.7 bits (98), Expect = 6e-13 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 2187 AATTACAGGGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2246 Query 7089 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAACAA-ATCAT 7147 || || |||||| | |||||||||| | ||||| || |||| | | || |||| Sbjct 2247 CCACGAAGAGGTGAAAACTTTGTCACCAGAAAGATCACA-AGGGCAGTAGGCAGGATCAA 2305 Query 7148 GAAGGGT--GAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGT 7205 || ||| | |||| | ||| ||||| || || | || |||||||||||| Sbjct 2306 GATCGGTCTGCAAAGCAAACTATTC--TTGGGGAATTTACAAGCTTCAAGAGATTGGGGT 2363 Query 7206 CACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGA 7264 || |||||| || ||||| |||||| | ||||| || || || ||||| || || Sbjct 2364 TTTGCAGGGGACTACGTGGAAGCAATGTGGTTGATGCTACAGCAGGA-TAAGCCAGATGA 2422 Query 7265 ATATGTAGTAGCAAC 7279 ||||| || ||||| Sbjct 2423 CTATGTGGTGGCAAC 2437 >seq107321 Length=2628 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | |||||| ||||| || || | ||| || ||||| ||| |||||||| || || Sbjct 1280 GTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCC 1221 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || || || | ||| | || |||||||| ||||||||||||||||| || || || Sbjct 1220 TCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCA 1161 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | | || || ||||||| ||| | || | |||| | | || Sbjct 1160 AGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGA---TCCATCGATCCATCTGAGGGC 1104 Query 117465 CCATTTCGCCTTCTTCT 117481 |||||| || ||||||| Sbjct 1103 CCATTTAGCTTTCTTCT 1087 >seq6274 Length=8207 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 || ||||| ||||| | |||||| || |||||||| || | ||| || || | | ||| Sbjct 4823 AAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCC 4882 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 |||| || || |||| | ||||| || || ||| | ||||| || || | |||| Sbjct 4883 TTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATT 4942 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT 107025 ||||||||||||| ||| |||||||| || || || Sbjct 4943 GGAATAATACCATTAGATGTTCCATTTGTGCCACGTAT 4980 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || || ||||| ||||||||||| ||||| || | || ||| ||||| |||| || Sbjct 5210 TGAGGCCTGGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAAC-CACCTCTG 5268 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| | ||||| | | ||||||||||||||||| || || || | || Sbjct 5269 TGACATTAAATGATATGTTTTGATTACAGAATCAATGTCTTCTTTATGAATCCCAACTGC 5328 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346 || | ||| | ||| | ||| || |||||| | | || || | | | ||||| Sbjct 5329 AACTCTCATCAGCATATGTTGAGGCCTTTCCACAACATTTCCTTCTATCTTTAAGAGATA 5388 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||| ||||| ||| || | ||| ||||||| Sbjct 5389 AGACCTTTCAAGGGTTTTGAATCCAAAATAATCATAGTCAAAGTCCCG 5436 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 ||||||||| ||| || ||||||||||| || | ||||||||| ||||||| | || Sbjct 3539 CAAAATAAAAGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTTAAGTT 3598 Query 106327 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 ||| || ||||| ||||| || || | ||| ||||||| | ||| |||||| | Sbjct 3599 TGACCTTTTTGCAGTTTCAACAGGGTAGTAGTTTACATCAATGATTTTGTTGAGATTTAT 3658 Query 106387 GGTAACAA 106394 ||||||| Sbjct 3659 TGTAACAA 3666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583519699016400