Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_014792.1 Length=169285 Score E Sequences producing significant alignments: (Bits) Value seq30067 134 1e-26 seq159469 131 2e-25 >seq30067 Length=5021 Score = 134 bits (148), Expect = 1e-26 Identities = 275/409 (67%), Gaps = 0/409 (0%) Strand=Plus/Minus Query 141354 TTATTCAACTGAACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTG 141413 ||||| | |||| ||||||| | ||| | | | |||||||||| ||| ||||| Sbjct 3720 TTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTG 3661 Query 141414 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 141473 || || | ||| | ||||||||||||||| |||||||||| |||||| || ||| ||| Sbjct 3660 TTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 3601 Query 141474 GCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 141533 || || || | | || ||||| ||||| ||||| ||||| |||| |||||||| | Sbjct 3600 GCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAA 3541 Query 141534 AACGGAATAACACCAGTATGCTTGACTTCACCCATACCGATTTTCGAACCTTCAGCACGA 141593 || || ||| ||||||||| |||| || | | || ||| || ||| Sbjct 3540 AAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGA 3481 Query 141594 ATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTGATATATTCGATGATTGAATTG 141653 || || | || ||||| || || || || | | ||||| | || || | Sbjct 3480 ATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTA 3421 Query 141654 GCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGAACTGAAC 141713 | ||| ||| || || || | |||||| ||| || | ||||| ||||| || Sbjct 3420 GTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAAT 3361 Query 141714 TGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAA 141762 || || ||||| |||||| | || | ||| || ||||| || || |||| Sbjct 3360 TGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAA 3312 >seq159469 Length=1977 Score = 131 bits (144), Expect = 2e-25 Identities = 272/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 141393 TTTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAT 141452 |||||||||| || | || || || | ||| | |||| |||||||||| ||||||||| Sbjct 1328 TTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCAT 1387 Query 141453 AAAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACA 141512 | |||||| || ||| ||||| || || | | ||| ||||||||||||||||| || Sbjct 1388 ATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACG 1447 Query 141513 GCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCG 141572 || |||| || ||||| | || || ||| ||||||||| ||||||| | | Sbjct 1448 GCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTA 1507 Query 141573 ATTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTG 141632 || ||| || ||||| || | || |||||||| || || || | || Sbjct 1508 ATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG--TTGTG 1565 Query 141633 AT--ATATTCGATGATTGAATTGGCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTT 141690 || ||||| | || || | | || ||| || || || | |||||| || Sbjct 1566 ATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATT 1625 Query 141691 CGATAACCACACAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTG 141750 |||| | ||||| ||||| ||||| || ||||| |||| | || | ||| || |||| Sbjct 1626 CGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTG 1685 Query 141751 TGGGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACG 141793 | || || |||| | || || | ||||| ||||||||| Sbjct 1686 TTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAACG 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535652910522000