Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq30067 149 9e-31 seq159469 114 2e-20 >seq30067 Length=5021 Score = 149 bits (164), Expect = 9e-31 Identities = 406/617 (66%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 33120 GAACTTGTTAATATGTACTGTATAATCAATATTACGAATACGGGTTTCTTCAGTACCTTT 33179 ||| || ||||| || | || ||| || | || ||| | | |||||||| | || | Sbjct 3724 GAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCT 3665 Query 33180 ATTATTTTTCAATACCAGAAGCTTTTCAACTTCCAAATGCCACATAGGATAGTTAATATT 33239 || ||||| || || | | ||||||||||| |||||||| || ||||| |||| | Sbjct 3664 GTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGT 3605 Query 33240 ACCACTACCNNNNNGAACACCACCTTGGCTACAGCTCTTAACACCGGTAGTAAAATGTTT 33299 || || |||||| ||||| ||| || ||| || | ||||||||| Sbjct 3604 TGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTT 3545 Query 33300 CCAGAATGGAATGACCCCAGTGTGGGAAACTTCCCCCGAGCGGATACGAGATCCTTCAGC 33359 | || || || ||||| || | |||| || | ||| || |||| || Sbjct 3544 ATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGC 3485 Query 33360 ACGAATAGCACCACCATTAATACCAATACCGGCACGGCGGGAAATATATTTCATTATCGC 33419 ||||| || ||||||||||||| || ||||| |||||| |||||| | || | Sbjct 3484 GCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGA 3425 Query 33420 TTTTGATGTTTCTCCGATAGATTCAAGAGAGTCACCGGATTCAATTTTAACGCATGAGCT 33479 | | ||| | || || | | | ||| | |||||||| ||| || || || Sbjct 3424 GCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACT 3365 Query 33480 AAATTGACGAGTTGGAGTTCTTACACCAGAAAGAATTGGTGTCGGTAGAGAAATTTCAAA 33539 |||||||||||| |||||||| || ||||| | ||||||||| |||| ||||||| ||| Sbjct 3364 AAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAA 3305 Query 33540 ATTACTAGCGGCATTATAAAAATCGAT-AACATATTCCAAACGTTTGGAAACGTCTT-CT 33597 | || | ||||| |||||| |||| || ||| | | || | | || | || Sbjct 3304 AGTAGAAATAGCATTGTAAAAA-CGATGAATATAATTTA----TTCGAATACTTTTTGGA 3250 Query 33598 TCTTGA-TGAAGACACAT--AGCTTGTAACATATATGCAAACTGTGGAGTTTCATAAATT 33654 | |||| || | |||| || | ||| ||||| ||| || | | ||||||| ||| Sbjct 3249 TATTGAGAAAATAAACATGCAGATATTAAAATATACAAAAATTGCGCACTTTCATATATT 3190 Query 33655 GTACCGTTAGAACGGTCTTTTACAAGATATTTTTCTTTATACTGCATAGCACCAGCATAA 33714 | ||| || ||| | | || | ||||||| ||| |||| | | | ||||| Sbjct 3189 TTTCCGCTAACACGATTCTGTATTAAATATTTTGCTTCTAACTGTTTTACTGCTGCATAT 3130 Query 33715 GTGAAATTCATATCTCG 33731 | |||||||||||||| Sbjct 3129 GAAAAATTCATATCTCG 3113 >seq159469 Length=1977 Score = 114 bits (126), Expect = 2e-20 Identities = 289/441 (66%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 33121 AACTTGTTAATATGTACTGTATAATCAATATTACGAATACGGGTTTCTTCAGTACCTTTA 33180 || || ||||| || | || |||||||||| ||| | | |||||||| | ||| || Sbjct 1286 AATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTA 1345 Query 33181 TTATTTTTCAATACCAGAAGCTTTTCAACTTCCAAATGCCACATAGGATAGTTAATATTA 33240 |||||||| || || | | |||||||||| |||||||| || ||||| |||| | Sbjct 1346 TTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTT 1405 Query 33241 CCACTACCNNNNNGAACACCACCTTGGCTACAGCTCTTAACACCGGTAGTAAAATGTTTC 33300 || || || || ||||| |||| || || | | ||| ||||| Sbjct 1406 GCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTA 1465 Query 33301 CAGAATGGAATGACCCCAGTGTGGGAAACTTCCCCCGAGCGGATACGAGATCCTTCAGCA 33360 | || || || ||||| || | |||| || | ||| || |||| || Sbjct 1466 TAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCG 1525 Query 33361 CGAATAGCACCACCATTAATACCAATACCGGCACGGCGGGAAATATATTTCATTATCGCT 33420 ||||| || |||||||||| || || ||||| | || | |||||| | || | Sbjct 1526 CGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAG 1585 Query 33421 TTTGATGTTTCTCCGATAGATTCAAGAGAGTCACCGGATTCAATTTTAACGCATGAGCTA 33480 | | || | ||||| | | | ||| | |||| ||| ||| || || ||| Sbjct 1586 CTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTA 1645 Query 33481 AATTGACGAGTTGGAGTTCTTACACCAGAAAGAATTGGTGTCGGTAGAGAAATTTCAAAA 33540 || |||||||| ||||||| ||| ||||| | ||| ||||| |||| ||||||| |||| Sbjct 1646 AACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAA 1705 Query 33541 TTACTAGCGGCATTATAAAAA 33561 || | |||||||||||| Sbjct 1706 GTAGAAATTGCATTATAAAAA 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744362742608400