Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq64520 479 3e-130 seq836247 215 6e-51 seq147675 156 5e-33 seq533404 143 3e-29 seq81374 118 1e-21 seq348021 104 3e-17 seq71880 96.9 4e-15 seq10361 86.0 7e-12 >seq64520 Length=3547 Score = 479 bits (530), Expect = 3e-130 Identities = 592/807 (73%), Gaps = 2/807 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 806 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 747 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 746 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 688 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 687 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 628 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || |||||||| || |||| |||| || || ||| | || || |||||||| Sbjct 627 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 568 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | ||||| |||||||| |||||||||||||| | | | | Sbjct 567 ATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 508 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | ||||||| | | | | Sbjct 507 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 448 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| |||||||||| |||||| |||||||| || || | || || ||| Sbjct 447 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 388 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||||| ||||||| || || ||||||||||||||||||||||| Sbjct 387 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 328 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 327 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 268 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || ||||| || |||||||| Sbjct 267 ATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 208 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || || | |||||| || | || Sbjct 207 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 148 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| |||||||||||||||||||| |||||||| || || || ||||| || || || Sbjct 147 TTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 88 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| |||||||||||||| | | | || ||||||||||| Sbjct 87 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 28 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTT 169296 | | || || ||| || | ||||| Sbjct 27 TGCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 215 bits (238), Expect = 6e-51 Identities = 227/299 (76%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 168947 TCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006 |||||||||||||||||| |||||| ||| || |||||||||||| | |||||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGA 169066 ||||||||||| |||||||| || || || ||| | | ||| | | | || | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 169067 TCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACT 169126 || ||||| || ||||||||||| | ||||| ||| | | ||||| || || || Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 169127 GAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATT 169186 || | ||||| || | ||||||| ||| |||||||||||||||| |||||||| Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 169187 GTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || || || ||||| || || || |||| |||||||| ||||| |||||||||| ||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTC 301 >seq147675 Length=2096 Score = 156 bits (172), Expect = 5e-33 Identities = 146/183 (80%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 168851 CTAGGTATGAGACCTTGGATCTGT-GTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 ||||||||| ||||||||| |||| ||||| |||||||| || || | || || ||| Sbjct 1474 CTAGGTATGCGACCTTGGA-CTGTTGTTGCATATTCAGCTCCTGTTACAGCTGCGACTGC 1416 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 | ||| | | |||| | ||||||| || || ||||||||||||||||||||||| Sbjct 1415 TATTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1356 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 |||||| || |||||||||||| | |||||||| || ||||||||||| |||||||| || Sbjct 1355 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1296 Query 169030 CTT 169032 || Sbjct 1295 ATT 1293 >seq533404 Length=557 Score = 143 bits (158), Expect = 3e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 169232 AGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTA 169291 |||||||||||||| | | | | ||||||||||| | | || || ||| || | Sbjct 557 AGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 498 Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351 ||||| || || | |||||| | || ||||| |||||| | || || || || || ||| Sbjct 497 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 438 Query 169352 CAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGA 169411 ||||| || || ||| | | || | ||| ||| |||| ||| | ||||| | Sbjct 437 CAATCGGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 378 Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTA 169471 || ||||||||||||||||| |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 377 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTA 318 Query 169472 GC 169473 || Sbjct 317 GC 316 >seq81374 Length=3119 Score = 118 bits (130), Expect = 1e-21 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 168923 TACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTC 168982 |||||| ||||||| || || ||| |||||||||||||| |||||| ||| || ||| Sbjct 620 TACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTC 561 Query 168983 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCA 169035 ||||||||| | ||||||||||| || |||||||| ||||||||||| || || Sbjct 560 AACTTCATGATTGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 >seq348021 Length=939 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||| | |||||||||||||||||||| |||||||| || || || ||||| || || Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACT 169244 || |||| |||||||| ||||| ||||||||||||| Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 939 >seq71880 Length=3346 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 168955 TATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAA 169014 ||||||||||||||||| ||| | |||||||||| | | | |||||| || |||||||| Sbjct 1573 TATGCCTCTAGGAATTTTTGGTGCTTTCAACTTCACGATTGCATTCCAGGCTGAGCACAA 1632 Query 169015 CATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATT 169074 ||| |||||||| || || | ||| ||| ||| ||| | ||||| | || ||||| Sbjct 1633 CATCCTTATGCACCCATTTCGAATGCTAGGCATAGTTGGTGTATTCGGAAGCTCCCTATT 1692 Query 169075 CTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCA 169115 | ||||||||||| | || | ||| | |||||| Sbjct 1693 TAGCATTATGCATGGTTCTTTGGTCATTTCTAGTTTAATCA 1733 >seq10361 Length=7172 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 169334 AACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGG 169393 || || || || || |||||||| || || ||| | | ||| | | ||| ||| ||| Sbjct 368 AATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACTTGG 309 Query 169394 GGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCAC 169453 | || | |||| || ||||||||||| ||||| |||||||| ||||| ||||| Sbjct 308 GCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCTCAT 249 Query 169454 AACTTCCCACTAGACTTAGC 169473 || ||||| ||||||||||| Sbjct 248 AATTTCCCTCTAGACTTAGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558260188372800