Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq64520 412 5e-110 seq836247 183 4e-41 seq147675 138 2e-27 seq533404 125 1e-23 seq71880 91.5 2e-13 >seq64520 Length=3547 Score = 412 bits (456), Expect = 5e-110 Identities = 561/783 (72%), Gaps = 0/783 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 785 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 726 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 725 GCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATT 666 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || || || ||||| || | Sbjct 665 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCAGGTGCCATTATT 606 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || ||||| || |||||||||||| | ||||| Sbjct 605 CCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGAT 546 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||||||||| |||| |||| || | | |||||| | ||||| | Sbjct 545 GAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 486 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||| ||| || | | | |||||| |||||||||| Sbjct 485 GCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATT 426 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || ||| | Sbjct 425 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATT 366 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||||| |||||| || ||||| ||||| || ||||||| |||| Sbjct 365 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 306 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| |||||| |||| || ||| Sbjct 305 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCT 246 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | || ||| ||||| ||||| | || || ||| | | Sbjct 245 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 186 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| ||||| ||||| || Sbjct 185 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAA 126 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 125 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 66 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | | || |||||||| || || | ||||| | ||||| Sbjct 65 AGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 6 Query 216095 TGG 216097 ||| Sbjct 5 TGG 3 >seq836247 Length=317 Score = 183 bits (202), Expect = 4e-41 Identities = 220/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 215750 TCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCT 215809 ||||||| |||||| || |||| | ||| || ||||||| |||| |||| ||||||||| Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 215810 GAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGT 215869 ||||||||||| || ||||||||||| |||||| || | || || ||| || | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 215870 TCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACT 215929 || | || ||| ||||| ||||| | || || ||| | | ||||| || || || Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 215930 GAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATC 215989 || | ||||| || | ||||||| ||| | ||||| || ||||| || || ||| Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 215990 GTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 ||||| || || ||||| ||||| || | ||||||||||| || |||||||| ||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTC 301 >seq147675 Length=2096 Score = 138 bits (152), Expect = 2e-27 Identities = 154/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGT-GTTGCTTACTCCGCA 215692 ||||||| ||| || | |||||||| ||||||||| |||| ||||| || || || Sbjct 1494 AGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGA-CTGTTGTTGCATATTCAGCT 1436 Query 215693 CCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCT 215752 ||||| | ||||| ||| | ||| | | || | | | ||||| || || ||| Sbjct 1435 CCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCT 1376 Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812 |||| |||||| || ||||| ||||| || ||||||| |||| |||| |||||||||||| Sbjct 1375 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 1316 Query 215813 CACAACATTCTGATGCACCCATT 215835 |||||||| || ||||||||||| Sbjct 1315 CACAACATCCTTATGCACCCATT 1293 >seq533404 Length=557 Score = 125 bits (138), Expect = 1e-23 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 |||||||||||| | | | | |||||||| || || | ||||| | ||||||| Sbjct 555 TTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 496 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | ||||| | ||| || |||||||| |||||||| || |||||||| |||||||| Sbjct 495 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 436 Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216 || || || || || || ||| ||||||||| || | ||||| | || Sbjct 435 ATCGGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 376 Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 |||||||||||||| ||||| || ||||| ||||| || ||||| ||||||| || Sbjct 375 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGC 316 Query 216277 TGCT 216280 |||| Sbjct 315 TGCT 312 >seq71880 Length=3346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 215758 TATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817 |||||| || ||||| | ||| | ||||||| || | ||| ||||||||||||||||| Sbjct 1573 TATGCCTCTAGGAATTTTTGGTGCTTTCAACTTCACGATTGCATTCCAGGCTGAGCACAA 1632 Query 215818 CATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGG 215865 ||| || ||||||||||| | ||| |||| | | |||||| ||||| Sbjct 1633 CATCCTTATGCACCCATTTCGAATGCTAGGCATAGTTGGTGTATTCGG 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736921931992800