Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq64520 428 5e-115 seq836247 167 3e-36 seq147675 143 3e-29 seq533404 136 5e-27 seq81374 93.3 5e-14 seq71880 89.7 6e-13 seq348021 86.0 7e-12 >seq64520 Length=3547 Score = 428 bits (474), Expect = 5e-115 Identities = 573/797 (72%), Gaps = 0/797 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 797 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 738 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || ||||| Sbjct 737 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTGGAT 678 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || || || Sbjct 677 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCA 618 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | || || || || || ||||||||| Sbjct 617 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCA 558 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || |||||||||||| || || || | | |||||| Sbjct 557 GCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 498 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | ||||||| || | |||| | |||||| Sbjct 497 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATG 438 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 437 CGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTG 378 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| || || || || ||||||||||| || || ||||| Sbjct 377 ATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACT 318 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||||||| | |||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 317 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 258 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 257 CTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTA 198 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 197 ACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 138 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 137 GGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 78 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | | || |||||||| ||| | | ||| Sbjct 77 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCT 18 Query 170479 GTAGTATGCATCTGGTT 170495 |||||| | |||||||| Sbjct 17 GTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 167 bits (184), Expect = 3e-36 Identities = 214/295 (73%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 170146 TCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCA 170205 || || || ||||||||| | || | ||||| || ||||||||| | |||||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 170206 GAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGA 170265 ||||||||||| |||||||||||||| || ||| | | || || | | || | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 170266 GCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACA 170325 | || || || ||||| ||||| | ||||| ||| | | ||||| || || ||| Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 170326 GATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATT 170385 || || | || || | || |||| |||| | |||||||||||||| || || || Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 170386 GTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACA 170440 || || || ||||| || ||||| || | ||||||||||||||||| || |||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA 297 >seq147675 Length=2096 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGT-GT 170075 || |||||| | ||||||| || | || | |||||||||| ||||||| |||| || Sbjct 1507 TATATGGGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGA-CTGTTGT 1449 Query 170076 AGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCA 170135 |||||||| ||||| || |||| || ||| | ||||| | || | | ||||| Sbjct 1448 TGCATATTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCA 1389 Query 170136 GGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGT 170195 ||| || || || || ||||||||||| || || ||||| || ||||||||| | || Sbjct 1388 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 1329 Query 170196 ATTCCAAGCAGAGCACAACATTCTTATGCACCCATT 170231 |||||| || ||||||||||| |||||||||||||| Sbjct 1328 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq533404 Length=557 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 170458 TTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACA 170517 |||||||| ||| | | ||||||||| | |||||||| ||| | | ||||| |||| Sbjct 530 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 471 Query 170518 ATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAA 170577 ||||| || ||||| ||||| || || |||||||| || | || ||| | || Sbjct 470 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGCCGT 411 Query 170578 GTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCAT 170637 ||| || ||| ||||| || | ||||| | || ||||| ||||||||||| |||||| Sbjct 410 GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 351 Query 170638 GAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 || |||||||| || || ||||| || ||||| || Sbjct 350 GAACGTAATGCTCATAATTTCCCTCTAGACTTAGC 316 >seq81374 Length=3119 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 170109 TGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTAT 170168 ||| |||||| | || || | ||||| ||| || || | || ||||||||| | || Sbjct 633 TGTTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAAT 574 Query 170169 CTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCC 170228 | ||||| || ||||||||| | ||||||||||| || |||||||| |||||||| || Sbjct 573 TTTTGGTACTTTCAACTTCATGATTGTATTCCAAGCCGAACACAACATCCTTATGCATCC 514 Query 170229 ATTCCA 170234 ||| || Sbjct 513 ATTGCA 508 >seq71880 Length=3346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 170155 ATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAAC 170214 ||||||||||| || | ||| | || ||||||| | | | |||||| || ||||||||| Sbjct 1574 ATGCCTCTAGGAATTTTTGGTGCTTTCAACTTCACGATTGCATTCCAGGCTGAGCACAAC 1633 Query 170215 ATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTC 170274 || |||||||||||||| | ||| ||| | | |||| | |||||| ||| | || Sbjct 1634 ATCCTTATGCACCCATTTCGAATGCTAGGCATAGTTGGTGTATTCGGA--AGCTCCCTAT 1691 Query 170275 TCAGCA--ATGCACGGTTCACTTGTAACATCTTCTCTAATCA 170314 | |||| ||||| ||||| | || | ||| | |||||| Sbjct 1692 TTAGCATTATGCATGGTTCTTTGGTCATTTCTAGTTTAATCA 1733 >seq348021 Length=939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || || | |||||| |||||||||||||| || || || || || || ||||| || ||| Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAA 170441 || || | ||||||||||||||||| || ||||| Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576465012984000