Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015293.1 Length=30651 Score E Sequences producing significant alignments: (Bits) Value seq342690 154 3e-33 >seq342690 Length=956 Score = 154 bits (170), Expect = 3e-33 Identities = 202/280 (72%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 2001 ACAACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGTTTTT 2060 ||||||||||| || || || |||| ||| | |||||| |||||| | |||| | Sbjct 616 ACAACAATTTCTGTAGTATAACGTTCTAAACCATTTTGGTCTTGCCATTTTCTAGTTTGT 675 Query 2061 AACTTGCCTTCAATGTATAGCTTACTACCCTTACGTACATACTCGCCGATTATTTCAGCT 2120 | |||||||| |||| | | ||| || || | ||| || ||| ||||| ||| Sbjct 676 AGTGATCCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCACCGGCAATTTCTGCT 735 Query 2121 AACTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTCTTCTTTTGGCTCGCCAGTGCTT 2180 || |||||||| | || ||||| ||||| || |||| |||||| || ||||| || Sbjct 736 AATTTTCCAAATAATACTATTCTATGCCATTCTGTTTTTTCTTTATTTTCTCCAGTATTT 795 Query 2181 TTATCCTTCCATTTTTCGCTAGTTGCTAGAGTTAGGTTTGCCACTGCATTTCCGTTAGGT 2240 ||||| ||||| ||||| |||||||| ||| | ||| | |||||||| || || || Sbjct 796 TTATCTTTCCAATTTTCTGAAGTTGCTAAAGTCATATTTACTACTGCATTACCATTGGGC 855 Query 2241 ATGTAACGAATTTCTGGATCTTGACCAGCATTACCAATAA 2280 || ||||| | |||||||||||| || || ||||||| Sbjct 856 ATATAACGTACTTCTGGATCTTGTCCTAAATGTCCAATAA 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96942426493660