Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq30067 122 9e-23 seq159469 109 5e-19 seq408088 100 3e-16 >seq30067 Length=5021 Score = 122 bits (134), Expect = 9e-23 Identities = 268/399 (67%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 54214 TTGATCTGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGACCACGGTTGTTC 54273 || || ||||| ||||||||| | | ||| | | || ||||||| || | |||||| Sbjct 3717 TTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTT 3658 Query 54274 TTCAGGACCACAACATCATCAAATTGATAATGCCAGATAGGGATATAGCA-AGTTGCTGA 54332 || | || | | || |||| || | ||||||| || || ||| | | |||||| | Sbjct 3657 TTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGG-ATAAAAAATAGTTGCAGC 3599 Query 54333 TCCGCCACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTCAGATATTTTATGAA 54392 ||| || | || ||| |||||||| ||||| |||| || | | || ||| || Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 54393 AGGAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGGCTACCGATGCCACGAAT 54452 ||| | || || || | ||| || |||| ||||| || || | | ||||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 54453 TGCTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAATCAACAATACTTTTGGC 54512 | ||| ||| || || || ||||| |||| ||| ||||| | ||||||| | | Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGT 3419 Query 54513 TGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGAACACAAGAACTGAATTG 54572 ||| ||||| || || | ||| | ||| | || || | |||||||||||| ||||| Sbjct 3418 TGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 54573 GCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGG 54611 || || || || | || || ||||| || |||||||| Sbjct 3358 ACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGG 3320 >seq159469 Length=1977 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 54417 TTCACCTTTTCGGATAGGGCTACCGATGCCACGAATTGCTCCAACATCAAATCCGATCCC 54476 |||||| |||| ||||| || || | | |||||| ||| ||| || ||||| || Sbjct 1495 TTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCC 1554 Query 54477 AGCGCGTTTGGATACATAATCAACAATACTTTTGGCTGTAGCATTGATTGAGTCCAAAGT 54536 ||| |||| |||||||| | ||||||| | | |||||||| || |||| ||| | Sbjct 1555 AGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATT 1614 Query 54537 GTCACCGGTTTTGATAAGAACACAAGAACTGAATTGGCGGGTTGGGGTACGAACGCCGGA 54596 ||| | || ||| | |||||||||||| || || || || || || || || || || Sbjct 1615 ATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGA 1674 Query 54597 CATGATGGGTGTTGG 54611 ||| ||||||||||| Sbjct 1675 CATAATGGGTGTTGG 1689 >seq408088 Length=780 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 137230 TGGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||| Sbjct 620 TGGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 679 Query 137290 TCCAGCCAGGGTCACCAA 137307 |||||| |||| || ||| Sbjct 680 TCCAGCAAGGGCCATCAA 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496964493267600