Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq102355 100 2e-16 seq40887 98.7 6e-16 seq86036 95.1 8e-15 seq35420 95.1 8e-15 seq161151 93.3 3e-14 seq90807 87.8 1e-12 seq27206 87.8 1e-12 seq90319 86.0 4e-12 seq50039 86.0 4e-12 >seq102355 Length=2708 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | ||| |||| |||| ||||| ||||||||||| || Sbjct 1275 TCCTTCTGGATGTTATAGTCTGCAAGTGTTCGCCCATCCTCCAGTTGTTTTCCGGCGAAG 1216 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| || || || | || | ||||||||| || ||| || |||| | | Sbjct 1215 ATCAATCGCTGTTGATCCGGTGGAATCCCCTCCTTATCTTGAAT-TTTGGTTTTA---AC 1160 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| || | |||||| || | ||| || || ||||| ||||| || || Sbjct 1159 GTTATCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTT 1100 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 1099 AACGAAGATCTGCATA 1084 >seq40887 Length=4418 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||||| | | || | || || |||||||||||||| || Sbjct 2719 TCCTTCTGGATGTTATAGTCCGCCAATGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAG 2660 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | || |||||||| ||| || ||||||| Sbjct 2659 ATGAGACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTG 2600 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || | ||| || |||||||| || | || |||||| Sbjct 2599 TCAATGGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTTCCGGTCAAGGTTTTCACA 2540 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2539 AAGATCTGCATA 2528 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| |||| ||| || ||||| ||||| ||||| | | | || | || || Sbjct 2966 AACCAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCCGTCCTC 2907 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||||||| || || || | |||||||| | || | ||| ||||| || Sbjct 2906 CAACTGTTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 2847 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| || || ||||||| || | ||||| || | ||| |||| Sbjct 2846 GATCTTTGCTTTCAC--AT--TATCGATGGTGTCGGAGCTTTCAACTTCCAAGGTAATGG 2791 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || | ||||||||||||||||||||| Sbjct 2790 TTTTTCCGGTCAAGGTCTTCACAAAGATCTGCATA 2756 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||| | ||||| || ||| || || ||||| || || | Sbjct 2071 CCTCCTCTCAATCGAAGAACGAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCC 2012 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || | || || ||||| |||||||| || || || | ||| |||||| | || Sbjct 2011 AAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGA 1952 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||| |||||||| || || |||||| | || | || | ||| || Sbjct 1951 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTATCTGAGCTCTCGACT 1892 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || ||||| ||||||||||| || ||||||||||| Sbjct 1891 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 1845 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | | | | || |||| || |||||||||||||| || Sbjct 2492 TTCCTTCTGGATGTTGTAGTCAGCTAAGGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAA 2433 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||||||||| ||| | || | || || ||||| || || |||||| | Sbjct 2432 GATAAGTCGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGTATTTTAGCTTTGAC--A 2375 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | || || || | ||| || ||||| || |||||||||| Sbjct 2374 T--TGTCGATTGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTACCGGTGAGAGTCT 2317 Query 34966 TCACAAAGATCTGCAT 34981 | || || |||||||| Sbjct 2316 TGACGAAAATCTGCAT 2301 >seq86036 Length=3019 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | ||| |||| |||| ||||| ||||||||||| || Sbjct 475 TCCTTCTGGATGTTATAGTCTGCAAGTGTTCGCCCATCCTCCAGTTGTTTTCCGGCGAAG 534 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| || || || | || | ||||||||| || ||| || |||| | | Sbjct 535 ATCAATCGCTGTTGATCCGGTGGAATCCCCTCCTTATCTTGAAT-TTTGGTTTTA---AC 590 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| || | |||||| || | ||| || || || || ||||| || || Sbjct 591 GTTATCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATCGTCTTCCCGGTGAGGGTTTT 650 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 651 AACGAAGATCTGCATA 666 >seq35420 Length=4697 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||| ||||| ||||| ||||| | ||| | || | || || | Sbjct 1657 CAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGA 1598 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| |||||||| || || | || ||||||||| | || | || |||||||| | Sbjct 1597 GCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 1538 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 | || ||| ||| | || | || | ||| || |||| ||| ||||| |||| Sbjct 1537 TTTTTGCTTTCACGTTGTCGATTGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTTC 1478 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| ||||| || |||||||||||| Sbjct 1477 CGGTGAGGGTCTTGACGAAGATCTGCATA 1449 >seq161151 Length=1962 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| ||| | || || ||||| |||||||| || Sbjct 1308 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAG 1367 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | ||||||||||| ||||| ||| || Sbjct 1368 ATGAGACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCTTTCACATTG 1427 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| || ||| || || | || || || || ||||| || || ||||| Sbjct 1428 TCGATCGTGTCAGAGGACTCTACCTCCAACGTGATCGTCTTACCCGTTAGGGTTTTCACG 1487 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1488 AAGATCTGCAT 1498 >seq90807 Length=2923 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| | ||| ||| | || || Sbjct 1389 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCA 1330 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || ||||| || ||||| | || | || |||||||| Sbjct 1329 AGCTGCTTTCCGGCGAAGATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGG 1270 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || || | |||| || || ||||| || | ||| || || || Sbjct 1269 ATCTTCGCCTTCACATTGTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTA 1210 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTTGT 34995 ||||| || || ||||| ||||||||||| |||| || |||| Sbjct 1209 CCCGTTAGGGTTTTCACGAAGATCTGCAT-TTCGCCGATTTGT 1168 >seq27206 Length=5223 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || |||| ||| ||| | || |||| |||||| ||||| || Sbjct 3094 TTCCTTCTGAATATTGTAATCCGCTAGGGTTCTGCCGTCTTCCAACTGTTTCCCGGCGAA 3153 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||| || | |||||| || | || | ||| ||||| || ||||| ||| ||| Sbjct 3154 TATGAGCCTTTGCTGATCAGGGGGGATCCCTTCCTTATCCTGGATCTTTGCTTTAACGTT 3213 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| ||| || || | ||| ||||| || || ||||| || || || Sbjct 3214 GTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATGGTCTTGCCGGTGAGGGTTTTGAC 3273 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 3274 AAAGATCTGCATA 3286 >seq90319 Length=2932 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG-- 34812 |||||||||| |||||| || | ||||| || || ||||| ||||| || |||| Sbjct 943 CCTCCCCTCAGCCTCAACACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCC 1002 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || | || || || ||||||||||| || || | | ||||||||| | | Sbjct 1003 AAAGTC--CGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTG 1060 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||||||| |||||| || ||| | || | || | ||| | Sbjct 1061 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCA 1120 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || || || || || || | |||||||| || ||||||||| Sbjct 1121 CCTCCAAAGTAATCGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCATA 1170 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| ||| | || || |||||||||||||| || Sbjct 1206 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCTAGCTGTTTTCCGGCGAA 1265 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || |||||| | || | || |||||||| ||||| || ||| Sbjct 1266 GATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1325 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || || | ||| ||||||||||| || | || ||||| Sbjct 1326 GTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTTCCGGTCAAGGTTTTCAC 1385 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 1386 AAAGATCTGCAT 1397 >seq50039 Length=4031 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| ||| || || ||||||||||||||||| || Sbjct 1023 TTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCGGCGAA 1082 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||| || | || | || |||||||| || ||| |||||| | Sbjct 1083 GATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTGAC--A 1140 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || || || || || | ||| |||||||| || || || || | Sbjct 1141 T--TGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTTT 1198 Query 34966 TCACAAAGATCTGCAT 34981 | || || |||||||| Sbjct 1199 TTACGAAAATCTGCAT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321167295316080