Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq159469 226 3e-54 seq30067 210 2e-49 >seq159469 Length=1977 Score = 226 bits (250), Expect = 3e-54 Identities = 321/450 (71%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 137996 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCC 138055 ||||| | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 138056 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138115 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 138116 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138175 ||| ||||| || || | | ||| || ||||| || ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 138176 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTC 138235 ||| ||||||| ||| |||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 138236 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 138295 || ||||| || | |||||||| |||||||| |||| || | ||||| |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 138296 TGA---AGCAGAAGCTTTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCA 138352 || || || ||| || |||||| || | |||| | ||| || | ||| || Sbjct 1582 AGAGCTAGTAGTAGCATT---AATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 138353 TGAACTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 138412 ||||||||||| ||||| ||||| || |||| |||||| || |||||||||||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 138413 CTGTCGAGTAGATACCGCTTCATAAAAACG 138442 | |||||| | || | ||||||||| Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 210 bits (232), Expect = 2e-49 Identities = 312/440 (71%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 138005 ATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATT 138064 ||| | ||||| |||| || | |||||| | | |||||||| | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 138065 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138124 ||| ||||| | | |||||||||||| |||||||| || |||||| || ||| ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 138125 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138184 || || | || || || || || || ||||| ||||| | ||||||||||| |||| Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 138185 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138244 ||| ||| |||||||||| | |||| || | | ||| | ||| || ||||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 138245 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 138304 || | ||||||||||||||||| |||| ||| | ||||| |||||| || || Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGT 3419 Query 138305 AGCTTTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTG 138364 | ||||| || || | |||| | |||||| | ||| || |||||||| || Sbjct 3418 TGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 138365 CCGAGTTGGAGTAC-GACAGCCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAG 138423 ||||| ||||| | ||| |||| |||||| || |||||||||||||| | ||||| Sbjct 3358 ACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAG 3300 Query 138424 ATACCGCTTCATAAAAACGA 138443 | | || | ||||||||| Sbjct 3299 AAATAGCATTGTAAAAACGA 3280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524999669972400